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Protein

SNRPN upstream reading frame protein

Gene

Snurf

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • ATPase binding Source: MGI
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
SNRPN upstream reading frame protein
Gene namesi
Name:Snurf
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 7

Organism-specific databases

MGIiMGI:1891236. Snurf.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: MGI
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7171SNRPN upstream reading frame proteinPRO_0000312994Add
BLAST

Proteomic databases

PaxDbiQ9WU12.
PRIDEiQ9WU12.

PTM databases

iPTMnetiQ9WU12.
PhosphoSiteiQ9WU12.

Expressioni

Tissue specificityi

Expressed in brain and embryonic stem (ES) cells (at protein level). Expressed in the brain, ovary, testis, liver, heart, kidney and muscle.2 Publications

Gene expression databases

ExpressionAtlasiQ9WU12. baseline and differential.
GenevisibleiQ9WU12. MM.

Interactioni

GO - Molecular functioni

  • ATPase binding Source: MGI

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000136053.

Family & Domainsi

Sequence similaritiesi

Belongs to the SNURF family.Curated

Phylogenomic databases

eggNOGiENOG410J0MJ. Eukaryota.
ENOG41115Q9. LUCA.
GeneTreeiENSGT00390000009320.
HOGENOMiHOG000154361.
HOVERGENiHBG098497.
InParanoidiQ9WU12.
OMAiCHLYPRR.
OrthoDBiEOG091G150Y.
TreeFamiTF338383.

Family and domain databases

InterProiIPR009847. SNURF.
[Graphical view]
PANTHERiPTHR14508. PTHR14508. 1 hit.
PfamiPF07192. SNURF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9WU12-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MERGRDRLHL RRTTEQHVPE VEVQVKRRRT ASLSNQECHL YPRRSQQQQV
60 70
PVVDFQAELR QAFLAETPRG G
Length:71
Mass (Da):8,407
Last modified:November 1, 1999 - v1
Checksum:i89BEEFAA81D3076C
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti2 – 43ERG → QQP in AAK77667 (PubMed:11431693).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF101042 mRNA. Translation: AAD31389.1.
AF332579 Genomic DNA. Translation: AAK77666.1.
AF332579 Genomic DNA. Translation: AAK77667.1.
BC132082 mRNA. Translation: AAI32083.1.
BC132084 mRNA. Translation: AAI32085.1.
CCDSiCCDS57553.1.
RefSeqiNP_149409.1. NM_033174.3.
UniGeneiMm.274995.

Genome annotation databases

EnsembliENSMUST00000179360; ENSMUSP00000136053; ENSMUSG00000000948.
ENSMUST00000194059; ENSMUSP00000141531; ENSMUSG00000102627.
GeneIDi84704.
KEGGimmu:84704.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF101042 mRNA. Translation: AAD31389.1.
AF332579 Genomic DNA. Translation: AAK77666.1.
AF332579 Genomic DNA. Translation: AAK77667.1.
BC132082 mRNA. Translation: AAI32083.1.
BC132084 mRNA. Translation: AAI32085.1.
CCDSiCCDS57553.1.
RefSeqiNP_149409.1. NM_033174.3.
UniGeneiMm.274995.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000136053.

PTM databases

iPTMnetiQ9WU12.
PhosphoSiteiQ9WU12.

Proteomic databases

PaxDbiQ9WU12.
PRIDEiQ9WU12.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000179360; ENSMUSP00000136053; ENSMUSG00000000948.
ENSMUST00000194059; ENSMUSP00000141531; ENSMUSG00000102627.
GeneIDi84704.
KEGGimmu:84704.

Organism-specific databases

CTDi8926.
MGIiMGI:1891236. Snurf.

Phylogenomic databases

eggNOGiENOG410J0MJ. Eukaryota.
ENOG41115Q9. LUCA.
GeneTreeiENSGT00390000009320.
HOGENOMiHOG000154361.
HOVERGENiHBG098497.
InParanoidiQ9WU12.
OMAiCHLYPRR.
OrthoDBiEOG091G150Y.
TreeFamiTF338383.

Miscellaneous databases

ChiTaRSiSnurf. mouse.
PROiQ9WU12.
SOURCEiSearch...

Gene expression databases

ExpressionAtlasiQ9WU12. baseline and differential.
GenevisibleiQ9WU12. MM.

Family and domain databases

InterProiIPR009847. SNURF.
[Graphical view]
PANTHERiPTHR14508. PTHR14508. 1 hit.
PfamiPF07192. SNURF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSNURF_MOUSE
AccessioniPrimary (citable) accession number: Q9WU12
Secondary accession number(s): Q924D8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: November 1, 1999
Last modified: September 7, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Miscellaneous

Encoded on a bicistronic transcript that code for two proteins, SNRPN and SNURF. Only the primary 1.6-kb bicistronic SNURF-SNRPN transcript is detected.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.