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Protein

60S ribosomal protein L38

Gene

RpL38

Organism
Drosophila melanogaster (Fruit fly)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: GO_Central
  • structural constituent of ribosome Source: FlyBase

GO - Biological processi

  • cytoplasmic translation Source: FlyBase
  • ribonucleoprotein complex assembly Source: GO_Central

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-DME-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-DME-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-DME-72689. Formation of a pool of free 40S subunits.
R-DME-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-DME-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-DME-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L38
Gene namesi
Name:RpL38
ORF Names:CG18001
OrganismiDrosophila melanogaster (Fruit fly)
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome 2R

Organism-specific databases

FlyBaseiFBgn0040007. RpL38.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003195571 – 7060S ribosomal protein L38Add BLAST70

Proteomic databases

PaxDbiQ9W5N2.
PRIDEiQ9W5N2.

Expressioni

Gene expression databases

BgeeiFBgn0040007.
ExpressionAtlasiQ9W5N2. differential.
GenevisibleiQ9W5N2. DM.

Interactioni

Protein-protein interaction databases

BioGridi78269. 27 interactors.
IntActiQ9W5N2. 10 interactors.
MINTiMINT-985173.
STRINGi7227.FBpp0110412.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V6Welectron microscopy6.00Ck1-70[»]
ProteinModelPortaliQ9W5N2.
SMRiQ9W5N2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3499. Eukaryota.
ENOG4112229. LUCA.
GeneTreeiENSGT00390000003718.
InParanoidiQ9W5N2.
KOiK02923.
OMAiRDIKQFI.
OrthoDBiEOG091G0SPL.
PhylomeDBiQ9W5N2.

Family and domain databases

InterProiView protein in InterPro
IPR002675. Ribosomal_L38e.
PANTHERiPTHR10965. PTHR10965. 1 hit.
PfamiView protein in Pfam
PF01781. Ribosomal_L38e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD010361. Ribosomal_L38e. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9W5N2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPREIKEVKD FLNKARRSDA RAVKIKKNPT NTKFKIRCSR FLYTLVVQDK
60 70
EKADKIKQSL PPGLQVKEVK
Length:70
Mass (Da):8,200
Last modified:May 1, 2000 - v1
Checksum:iB70E2B5F6F8C7169
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE013599 Genomic DNA. Translation: EAA46007.1.
AY075491 mRNA. Translation: AAL68301.1.
RefSeqiNP_001036440.1. NM_001042975.2.
NP_001260700.1. NM_001273771.1.
UniGeneiDm.5474.

Genome annotation databases

EnsemblMetazoaiFBtr0111120; FBpp0110412; FBgn0040007.
FBtr0334985; FBpp0306998; FBgn0040007.
GeneIDi3355144.
KEGGidme:Dmel_CG18001.

Similar proteinsi

Entry informationi

Entry nameiRL38_DROME
AccessioniPrimary (citable) accession number: Q9W5N2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: May 1, 2000
Last modified: September 27, 2017
This is version 120 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programDrosophila annotation project

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Drosophila
    Drosophila: entries, gene names and cross-references to FlyBase
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. SIMILARITY comments
    Index of protein domains and families