ID PDE4A_DROME Reviewed; 1209 AA. AC Q9W4T4; DT 16-AUG-2005, integrated into UniProtKB/Swiss-Prot. DT 05-JUL-2004, sequence version 2. DT 24-JAN-2024, entry version 157. DE RecName: Full=3',5'-cyclic-AMP phosphodiesterase, isoform I {ECO:0000305}; DE EC=3.1.4.53; DE AltName: Full=Learning/memory process protein; DE AltName: Full=Protein dunce; DE AltName: Full=cAMP-specific phosphodiesterase, isoform I {ECO:0000305}; GN Name=dnc {ECO:0000312|EMBL:AAF45858.3}; ORFNames=CG32498; OS Drosophila melanogaster (Fruit fly). OC Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; OC Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; OC Drosophilidae; Drosophila; Sophophora. OX NCBI_TaxID=7227; RN [1] {ECO:0000312|EMBL:AAF45858.3} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=Berkeley {ECO:0000269|PubMed:10731132}; RX PubMed=10731132; DOI=10.1126/science.287.5461.2185; RA Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., RA Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., RA George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., RA Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X., Brandon R.C., RA Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., RA Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., RA An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., RA Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., RA Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., RA Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., RA Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., RA Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., RA Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., RA Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., RA Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., RA Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., RA Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., RA Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., RA Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., RA Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., RA Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., RA McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., RA Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., RA Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., RA Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., RA Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., RA Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., RA Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., RA Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., RA Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., RA Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., RA Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., RA Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., RA Venter J.C.; RT "The genome sequence of Drosophila melanogaster."; RL Science 287:2185-2195(2000). RN [2] {ECO:0000305, ECO:0000312|EMBL:AAF45858.3} RP GENOME REANNOTATION, AND ALTERNATIVE SPLICING. RC STRAIN=Berkeley; RX PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083; RA Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., RA Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., RA Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., RA Bettencourt B.R., Celniker S.E., de Grey A.D.N.J., Drysdale R.A., RA Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., RA Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.; RT "Annotation of the Drosophila melanogaster euchromatic genome: a systematic RT review."; RL Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] OF 1-524. RC STRAIN=Oregon-R; RX PubMed=10731137; DOI=10.1126/science.287.5461.2220; RA Benos P.V., Gatt M.K., Ashburner M., Murphy L., Harris D., Barrell B.G., RA Ferraz C., Vidal S., Brun C., Demailles J., Cadieu E., Dreano S., Gloux S., RA Lelaure V., Mottier S., Galibert F., Borkova D., Minana B., Kafatos F.C., RA Louis C., Siden-Kiamos I., Bolshakov S., Papagiannakis G., Spanos L., RA Cox S., Madueno E., de Pablos B., Modolell J., Peter A., Schoettler P., RA Werner M., Mourkioti F., Beinert N., Dowe G., Schaefer U., Jaeckle H., RA Bucheton A., Callister D.M., Campbell L.A., Darlamitsou A., Henderson N.S., RA McMillan P.J., Salles C., Tait E.A., Valenti P., Saunders R.D.C., RA Glover D.M.; RT "From sequence to chromosome: the tip of the X chromosome of D. RT melanogaster."; RL Science 287:2220-2222(2000). RN [4] {ECO:0000305} RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] OF 495-1209, FUNCTION, CATALYTIC RP ACTIVITY, AND SUBUNIT. RC STRAIN=Canton-S {ECO:0000269|PubMed:1660926}; RX PubMed=1660926; DOI=10.1016/0022-2836(91)90496-s; RA Qiu Y.H., Chen C.-N., Malone T., Richter L., Beckendorf S.K., Davis R.L.; RT "Characterization of the memory gene dunce of Drosophila melanogaster."; RL J. Mol. Biol. 222:553-565(1991). CC -!- FUNCTION: Hydrolyzes the second messenger cAMP, which is a key CC regulator of many important physiological processes (By similarity). CC Vital for female fertility. Required for learning/memory. {ECO:0000250, CC ECO:0000269|PubMed:1660926}. CC -!- CATALYTIC ACTIVITY: CC Reaction=3',5'-cyclic AMP + H2O = AMP + H(+); Xref=Rhea:RHEA:25277, CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:58165, CC ChEBI:CHEBI:456215; EC=3.1.4.53; CC Evidence={ECO:0000269|PubMed:1660926}; CC -!- COFACTOR: CC Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240; CC Evidence={ECO:0000250}; CC Note=Binds 2 divalent metal cations per subunit. Site 1 may CC preferentially bind zinc ions, while site 2 has a preference for CC magnesium and/or manganese ions. {ECO:0000250}; CC -!- PATHWAY: Purine metabolism; 3',5'-cyclic AMP degradation; AMP from CC 3',5'-cyclic AMP: step 1/1. CC -!- SUBUNIT: Monomer. {ECO:0000269|PubMed:1660926}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing, Alternative initiation; Named isoforms=12; CC Name=I {ECO:0000269|PubMed:1660926}; Synonyms=B CC {ECO:0000303|PubMed:10731132}, S; CC IsoId=Q9W4T4-1; Sequence=Displayed; CC Name=II {ECO:0000269|PubMed:1660926}; Synonyms=I CC {ECO:0000303|PubMed:10731132}, J {ECO:0000303|PubMed:10731132}; CC IsoId=P12252-1; Sequence=External; CC Name=III; Synonyms=E, P; CC IsoId=P12252-7; Sequence=External; CC Name=IV {ECO:0000269|PubMed:1660926}; Synonyms=A CC {ECO:0000303|PubMed:10731132}; CC IsoId=P12252-3; Sequence=External; CC Name=V {ECO:0000269|PubMed:1660926}; Synonyms=C CC {ECO:0000303|PubMed:10731132}; CC IsoId=P12252-4; Sequence=External; CC Name=VI {ECO:0000269|PubMed:1660926}; Synonyms=D CC {ECO:0000303|PubMed:10731132}; CC IsoId=P12252-5; Sequence=External; CC Name=VII {ECO:0000269|PubMed:1660926}; Synonyms=L CC {ECO:0000303|PubMed:10731132}; CC IsoId=P12252-6; Sequence=External; CC Name=F {ECO:0000303|PubMed:10731132}; CC IsoId=Q8IRU4-1; Sequence=External; CC Name=G {ECO:0000303|PubMed:10731132}; CC IsoId=Q9W4S9-2; Sequence=External; CC Name=N {ECO:0000303|PubMed:10731132}; CC IsoId=Q9W4S9-1; Sequence=External; CC Name=R; Synonyms=Q; CC IsoId=P12252-8, Q9W4T0-1; Sequence=External; CC Name=U; Synonyms=T; CC IsoId=P12252-9; Sequence=External; CC -!- SIMILARITY: Belongs to the cyclic nucleotide phosphodiesterase family. CC PDE4 subfamily. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=CAA19668.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AE014298; AAF45858.3; -; Genomic_DNA. DR EMBL; AL024484; CAA19668.1; ALT_SEQ; Genomic_DNA. DR RefSeq; NP_726846.1; NM_166959.2. [Q9W4T4-1] DR RefSeq; NP_726847.2; NM_166960.3. [Q9W4T4-1] DR AlphaFoldDB; Q9W4T4; -. DR SMR; Q9W4T4; -. DR BioGRID; 57834; 17. DR IntAct; Q9W4T4; 1. DR STRING; 7227.FBpp0305507; -. DR GlyGen; Q9W4T4; 1 site, 1 O-linked glycan (1 site). DR PaxDb; 7227-FBpp0305507; -. DR DNASU; 31309; -. DR EnsemblMetazoa; FBtr0070509; FBpp0070485; FBgn0000479. [Q9W4T4-1] DR EnsemblMetazoa; FBtr0333315; FBpp0305507; FBgn0000479. [Q9W4T4-1] DR GeneID; 31309; -. DR UCSC; CG32498-RA; d. melanogaster. [Q9W4T4-1] DR AGR; FB:FBgn0000479; -. DR CTD; 31309; -. DR FlyBase; FBgn0000479; dnc. DR VEuPathDB; VectorBase:FBgn0000479; -. DR eggNOG; KOG3689; Eukaryota. DR GeneTree; ENSGT00940000155190; -. DR HOGENOM; CLU_007660_0_0_1; -. DR InParanoid; Q9W4T4; -. DR OrthoDB; 240889at2759; -. DR PhylomeDB; Q9W4T4; -. DR Reactome; R-DME-180024; DARPP-32 events. DR Reactome; R-DME-418555; G alpha (s) signalling events. DR UniPathway; UPA00762; UER00747. DR BioGRID-ORCS; 31309; 1 hit in 3 CRISPR screens. DR ChiTaRS; dnc; fly. DR GenomeRNAi; 31309; -. DR Proteomes; UP000000803; Chromosome X. DR Bgee; FBgn0000479; Expressed in brain and 29 other cell types or tissues. DR ExpressionAtlas; Q9W4T4; baseline and differential. DR GO; GO:0005829; C:cytosol; IDA:FlyBase. DR GO; GO:0005634; C:nucleus; IDA:FlyBase. DR GO; GO:0048471; C:perinuclear region of cytoplasm; IBA:GO_Central. DR GO; GO:0045202; C:synapse; IEA:GOC. DR GO; GO:0004115; F:3',5'-cyclic-AMP phosphodiesterase activity; ISS:FlyBase. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0007615; P:anesthesia-resistant memory; IMP:FlyBase. DR GO; GO:0008306; P:associative learning; IMP:FlyBase. DR GO; GO:0048675; P:axon extension; IMP:FlyBase. DR GO; GO:0048149; P:behavioral response to ethanol; IMP:FlyBase. DR GO; GO:0006198; P:cAMP catabolic process; IEA:UniProtKB-UniPathway. DR GO; GO:0007268; P:chemical synaptic transmission; IMP:FlyBase. DR GO; GO:0007623; P:circadian rhythm; TAS:FlyBase. DR GO; GO:0001661; P:conditioned taste aversion; IMP:FlyBase. DR GO; GO:0007619; P:courtship behavior; TAS:FlyBase. DR GO; GO:0007612; P:learning; IMP:FlyBase. DR GO; GO:0007617; P:mating behavior; TAS:FlyBase. DR GO; GO:0072375; P:medium-term memory; IMP:FlyBase. DR GO; GO:0007613; P:memory; IMP:FlyBase. DR GO; GO:0106072; P:negative regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway; IMP:FlyBase. DR GO; GO:0046958; P:nonassociative learning; TAS:FlyBase. DR GO; GO:0008355; P:olfactory learning; TAS:FlyBase. DR GO; GO:0010738; P:regulation of protein kinase A signaling; IMP:FlyBase. DR GO; GO:0007614; P:short-term memory; IMP:FlyBase. DR GO; GO:0007165; P:signal transduction; IBA:GO_Central. DR GO; GO:0040040; P:thermosensory behavior; IMP:FlyBase. DR CDD; cd00077; HDc; 1. DR Gene3D; 1.10.1300.10; 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain; 1. DR InterPro; IPR003607; HD/PDEase_dom. DR InterPro; IPR040844; PDE4_UCR. DR InterPro; IPR023088; PDEase. DR InterPro; IPR002073; PDEase_catalytic_dom. DR InterPro; IPR036971; PDEase_catalytic_dom_sf. DR InterPro; IPR023174; PDEase_CS. DR PANTHER; PTHR11347:SF219; CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE, ISOFORM I; 1. DR PANTHER; PTHR11347; CYCLIC NUCLEOTIDE PHOSPHODIESTERASE; 1. DR Pfam; PF18100; PDE4_UCR; 1. DR Pfam; PF00233; PDEase_I; 1. DR PRINTS; PR00387; PDIESTERASE1. DR SUPFAM; SSF109604; HD-domain/PDEase-like; 1. DR PROSITE; PS00126; PDEASE_I_1; 1. DR PROSITE; PS51845; PDEASE_I_2; 1. DR Genevisible; Q9W4T4; DM. PE 1: Evidence at protein level; KW Alternative initiation; Alternative splicing; cAMP; Hydrolase; KW Metal-binding; Reference proteome. FT CHAIN 1..1209 FT /note="3',5'-cyclic-AMP phosphodiesterase, isoform I" FT /id="PRO_0000198817" FT DOMAIN 795..1124 FT /note="PDEase" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01192" FT REGION 16..35 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 59..82 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 275..353 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 372..403 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 442..498 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 626..655 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 754..792 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 1146..1209 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 275..324 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 326..342 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 372..402 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 626..649 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 754..768 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 775..790 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 1163..1179 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT ACT_SITE 871 FT /note="Proton donor" FT /evidence="ECO:0000250" FT BINDING 871..875 FT /ligand="3',5'-cyclic AMP" FT /ligand_id="ChEBI:CHEBI:58165" FT /evidence="ECO:0000250" FT BINDING 875 FT /ligand="a divalent metal cation" FT /ligand_id="ChEBI:CHEBI:60240" FT /ligand_label="1" FT /evidence="ECO:0000250" FT BINDING 911 FT /ligand="a divalent metal cation" FT /ligand_id="ChEBI:CHEBI:60240" FT /ligand_label="1" FT /evidence="ECO:0000250" FT BINDING 912 FT /ligand="3',5'-cyclic AMP" FT /ligand_id="ChEBI:CHEBI:58165" FT /evidence="ECO:0000250" FT BINDING 912 FT /ligand="a divalent metal cation" FT /ligand_id="ChEBI:CHEBI:60240" FT /ligand_label="1" FT /evidence="ECO:0000250" FT BINDING 912 FT /ligand="a divalent metal cation" FT /ligand_id="ChEBI:CHEBI:60240" FT /ligand_label="2" FT /evidence="ECO:0000250" FT BINDING 1029 FT /ligand="3',5'-cyclic AMP" FT /ligand_id="ChEBI:CHEBI:58165" FT /evidence="ECO:0000250" FT BINDING 1029 FT /ligand="a divalent metal cation" FT /ligand_id="ChEBI:CHEBI:60240" FT /ligand_label="1" FT /evidence="ECO:0000250" FT BINDING 1080 FT /ligand="3',5'-cyclic AMP" FT /ligand_id="ChEBI:CHEBI:58165" FT /evidence="ECO:0000250" FT SITE 1032 FT /note="Binds AMP, but not cAMP" FT /evidence="ECO:0000250" FT CONFLICT 1097 FT /note="D -> S (in Ref. 4; no nucleotide entry)" FT /evidence="ECO:0000305" FT CONFLICT 1166 FT /note="S -> T (in Ref. 4; no nucleotide entry)" FT /evidence="ECO:0000305" FT CONFLICT 1181..1182 FT /note="SG -> R (in Ref. 4; no nucleotide entry)" FT /evidence="ECO:0000305" SQ SEQUENCE 1209 AA; 129413 MW; A7E00D5BA862C1BE CRC64; MMRLARFTQG FSFNKNVAKH RGSGSSNGTG NGSGTGNGQG LGGSCSANGL AATGGVGGGG GSGSGGGGCG SGSGSGSGKR KSKARTKCFG GTVFRCCLPC RGGGSAAPAT SPPQTPAQTP DELKVIPEDC NLEKSAEQKR DLLERNNKED DLLNRTVSGS ELDLYGGAGG GTKKHSLADT IDTSVTTPIS LKTLINDVDE ELDQQLSAAD IAAASLASGL VARRAEPETL SDASVSPTAV VQQQQQQQQQ LQQPLLQSQP HFVPSSGNIL SQVTLYSGSN PSTNPCQSAV QNQGQNSNPN PNQNPNTNPN QNQQRCSCQP QTSPLPHIKE EEESDQANFK HQTSLKEHQP LPPPITIATG YCGSCESVHH SSATSSSAGT VPPGGQQTQE YIAGTSSTPS PRIKLKFRKP HKSCWSRIVL APIGSAGGSS SATTVIGSNS NETLASSSTT GGTATTTQNS SSVSVAAHHR LTSSSASALA TSHPSNSQLL PTSKMQAEQG SIGDLQKYHS RYLKNRRHTL ANVRFDVENG QGARSPLEGG SPSAGLVLQN LPQRRESFLY RSDSDFEMSP KSMSRNSSIA SERFKEQEAS ILVDRSHGED LIVTPFAQIL ASLRSVRNNL LSLTNVPASN KSRRPNQSSS ASRSGNPPGA PLSQGEEAYT RLATDTIEEL DWCLDQLETI QTHRSVSDMA SLKFKRMLNK ELSHFSESSR SGNQISEYIC STFLDKQQEF DLPSLRVEDN PELVAANAAA GQQSAGQYAR SRSPRGPPMS QISGVKRPLS HTNSFTGERL PTFGVETPRE NELGTLLGEL DTWGIQIFSI GEFSVNRPLT CVAYTIFQSR ELLTSLMIPP KTFLNFMSTL EDHYVKDNPF HNSLHAADVT QSTNVLLNTP ALEGVFTPLE VGGALFAACI HDVDHPGLTN QFLVNSSSEL ALMYNDESVL ENHHLAVAFK LLQNQGCDIF CNMQKKQRQT LRKMVIDIVL STDMSKHMSL LADLKTMVET KKVAGSGVLL LDNYTDRIQV LENLVHCADL SNPTKPLPLY KRWVALLMEE FFLQGDKERE SGMDISPMCD RHNATIEKSQ VGFIDYIVHP LWETWADLVH PDAQDILDTL EENRDYYQSM IPPSPPPSGV DENPQEDRIR FQVTLEESDQ ENLAELEEGD ESGGESTTTG TTGTTAASAL SGAGGGGGGG GGMAPRTGGC QNQPQHGGM //