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Q9W3I9 (Q9W3I9_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 100. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
GH01161p EMBL AAK77233.1
Submitted name:
TNF-receptor-associated factor 6 EMBL AAF46338.1
Gene names
Name:Traf6 FlyBase FBgn0026318
Synonyms:Traf2 FlyBase FBgn0026318 EMBL AAK77233.1
ORF Names:CG10961 FlyBase FBgn0026318, Dmel_CG10961 EMBL AAF46338.1
OrganismDrosophila melanogaster (Fruit fly)
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora

Protein attributes

Sequence length475 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 MATH domain. RuleBase RU004402

Contains 1 RING-type zinc finger. SAAS SAAS013323

Sequences

Sequence LengthMass (Da)Tools
Q9W3I9 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 7D996A0B6600600D

FASTA47553,844
        10         20         30         40         50         60 
MQRVQADQKP ARMHQHAHTH SHAHSLQHAE EKEHNSNEMT TNLSSTGRIA ASSSATPSAA 

        70         80         90        100        110        120 
AGGGASGAPT PPKSLALNQN HHYAPGSDTS GEQEEELLDS RYECAICIDW LNEPVLTSCG 

       130        140        150        160        170        180 
HRFCRSCLTA WMQKNNQCCP MDNKRLSAEH DIFPDNYTRR EIEQLKRDCP NSSLGCSVVA 

       190        200        210        220        230        240 
SPIELHRHLP SCPYRRQQEP QEEKCPFAKI KCDFVGRPET NQLEEHLKAD MPHHMQLMLQ 

       250        260        270        280        290        300 
AFQQTAIATW QPHKPSTSGA AVENGHGQQQ LPPPPQYANG VDEQIVQTMY QRIVVLEQRT 

       310        320        330        340        350        360 
REQETRLENM QKQLRLARQQ APVDPRYSNG TIVWRIEQLG ALVARLRANA NNQVYSHECY 

       370        380        390        400        410        420 
TSPHGYKFCA RLNIQPRKPH VLSLHVHLMQ SENDYHLDWP FKGRIKLCMV HPADATLSQH 

       430        440        450        460        470 
DTIMTKPEIL AFHKPREAIS TRGFGFLEYA NISNIIQLGF CADDRLLIKI EINIV

« Hide

References

« Hide 'large scale' references
[1]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[2]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley.
[3]Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J., Champe M., Chavez C., Dorsett V., Farfan D., Frise E., George R., Gonzalez M., Guarin H., Li P., Liao G., Miranda A., Mungall C.J., Nunoo J. expand/collapse author list , Pacleb J., Paragas V., Park S., Phouanenavong S., Wan K., Yu C., Lewis S.E., Rubin G.M., Celniker S.
Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley EMBL AAK77233.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE014298 Genomic DNA. Translation: AAF46338.1.
AY047501 mRNA. Translation: AAK77233.1.
RefSeqNP_511080.2. NM_078525.3.

3D structure databases

HSSPHSSP built from PDB template 1LB4 based on UniProtKB Q9Y4K3.
ProteinModelPortalQ9W3I9.
SMRQ9W3I9. Positions 96-228, 288-474.
ModBaseSearch...

Protein-protein interaction databases

IntActQ9W3I9. 3 interactions.
MINTMINT-283875.
STRINGQ9W3I9.

Proteomic databases

PRIDEQ9W3I9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0071188; FBpp0071136; FBgn0026318.
GeneID31746.
KEGGdme:Dmel_CG10961.
NMPDRfig|7227.3.peg.16955.
UCSCCG10961-RA. d. melanogaster.

Organism-specific databases

CTD7189.
FlyBaseFBgn0026318. Traf6.

Phylogenomic databases

InParanoidQ9W3I9.
OMALMQSEND.
PhylomeDBQ9W3I9.

Gene expression databases

ArrayExpressQ9W3I9.
BgeeQ9W3I9.

Family and domain databases

InterProIPR002083. MATH.
IPR013323. SIAH-type.
IPR008974. TRAF-like.
IPR013322. TRAF-type.
IPR018957. Znf_C3HC4_RING-type.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
[Graphical view]
Gene3DG3DSA:3.90.890.10. SIAH-type. 1 hit.
G3DSA:2.60.210.10. TRAF-type. 1 hit.
G3DSA:3.30.40.10. Znf_RING/FYVE/PHD. 1 hit.
KOK03175.
PfamPF00917. MATH. 1 hit.
PF00097. zf-C3HC4. 1 hit.
[Graphical view]
SMARTSM00184. RING. 1 hit.
[Graphical view]
SUPFAMSSF49599. Traf_like. 2 hits.
PROSITEPS50144. MATH. 1 hit.
PS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio775130.

Entry information

Entry nameQ9W3I9_DROME
AccessionPrimary (citable) accession number: Q9W3I9
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: January 25, 2012
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info