Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q9W395 (Q9W395_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 84. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names

Anaphase promoting complex 4, isoform B EMBL ACZ95249.1
Gene names
Name:APC4 EMBL AAF46439.1 FlyBase FBgn0052707
ORF Names:Dmel_CG32707 EMBL AAF46439.1
OrganismDrosophila melanogaster (Fruit fly)
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryotaMetazoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora

Protein attributes

Sequence length775 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q9W395 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 27DCE3F3450C655A

FASTA77587,462
        10         20         30         40         50         60 
MAQTSSMKLL GARNMSCIVE RMEWNNKMDL IAYGTEKGEV VIQRLNWQKI VTFPTPGEDV 

        70         80         90        100        110        120 
RVRSLSWQMD ETLLAVGYSN GKVALLDAES GTIISGLIYE DDIKKVYFSK AINSQENLGT 

       130        140        150        160        170        180 
YTCNVKDKHR RFLPKLQPMT NIDPCLKTLD QKSFPKGSPC FLVVIMRSGK VHLLLLGALQ 

       190        200        210        220        230        240 
AGSIDLTQHI LHPHEFDVYD VRMNGDCNAI YALLRDGQEL ILLHFQNQVL QDCMAPMLEL 

       250        260        270        280        290        300 
ATHCAHILET KNYINDTQQC LTEAWETVQL EMDNKLTRYA NSQPYGVISA HFLELHVFGF 

       310        320        330        340        350        360 
ATFEVEEFLF ETLSEKGFKK IANSVDLSLS NLQSLVFKQL NGAAINMFYF LNTIAGFGRM 

       370        380        390        400        410        420 
SHFFESLISP DVANEAMRAC GGFVLKVHEL QRTIDTLAYD MKLFHAWMIF TILRLSHQEI 

       430        440        450        460        470        480 
PDDLVLTEEE NIAMADFICA MEPELDDRSD DEDELDSQSQ TPPPARSKFN LERVGQYLDN 

       490        500        510        520        530        540 
AYLTQLYPRD PVQLWEEMVT DNECLSNCKL FVPHDVNLSL VQQRDKMFNA IDAVFHKPTE 

       550        560        570        580        590        600 
SISGSFKVSS TVICNDLPPM EPGEDHRDRD LVTCTYYVNE ASRTDMLACT ISGQEAMILE 

       610        620        630        640        650        660 
FSRAGDECVR CTRITLEPGL FTTSVSEDFC YLRFVDLQFY NESSLSILAQ SINAGPGMRP 

       670        680        690        700        710        720 
HSFFIQFSLT AALNYSTQHR MGPLVKLSEA TVSQSIHDIA DGAAFKGLDG FSDMLAVSGS 

       730        740        750        760        770 
RKVATVLSDR KRKMTIFEME IEEEEDDTEM SQASFLDISK ESVLAGVPDA EKQEA 

« Hide

References

« Hide 'large scale' references
[1]"The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
Smith C.D., Shu S., Mungall C.J., Karpen G.H.
Science 316:1586-1591(2007) [PubMed: 17569856] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Sequence finishing and mapping of Drosophila melanogaster heterochromatin."
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M., Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A., Dimitri P., Karpen G.H., Celniker S.E.
Science 316:1625-1628(2007) [PubMed: 17569867] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[3]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[4]"Combined evidence annotation of transposable elements in genome sequences."
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
PLoS Comput. Biol. 1:166-175(2005) [PubMed: 16110336] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley.
[6]"Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
Genome Biol. 3:RESEARCH0085.1-RESEARCH0085.16(2002) [PubMed: 12537574] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[7]"The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J.W., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) [PubMed: 12537573] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[8]"Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence."
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A., Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A., George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R., Pacleb J.M., Park S. expand/collapse author list , Pfeiffer B.D., Richards S., Sodergren E.J., Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C., Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.
Genome Biol. 3 (12), RESEARCH0079 (2002)
Cited for: NUCLEOTIDE SEQUENCE.
[9]Drosophila Heterochromatin Genome Project
Smith C.D., Shu S., Mungall C.J., Karpen G.H.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[10]FlyBase
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[11]"Drosophila melanogaster release 4 sequence."
Berkeley Drosophila Genome Project
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[12]Celniker S., Carlson J., Kennedy C., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Karpen G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[13]Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE014298 Genomic DNA. Translation: AAF46439.1.
AE014298 Genomic DNA. Translation: ACZ95249.1.
RefSeqNP_001162714.1. NM_001169243.1.
NP_572522.2. NM_132294.3.
UniGeneDm.3522.

3D structure databases

ProteinModelPortalQ9W395.
SMRQ9W395. Positions 17-111.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ9W395.

Proteomic databases

PRIDEQ9W395.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0071285; FBpp0071222; FBgn0052707.
FBtr0301806; FBpp0291020; FBgn0052707.
GeneID31835.
KEGGdme:Dmel_CG32707.
NMPDRfig|7227.3.peg.17079.
UCSCCG32707-RA. d. melanogaster.

Organism-specific databases

CTD31835.
FlyBaseFBgn0052707. APC4.

Phylogenomic databases

GeneTreeEMGT00050000017511.
InParanoidQ9W395.
OMACAHILET.
PhylomeDBQ9W395.

Gene expression databases

ArrayExpressQ9W395.
BgeeQ9W395.

Family and domain databases

InterProIPR024789. APC4.
IPR024790. APC4_long_dom.
IPR017169. APC4_metazoa.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR011046. WD40_repeat-like_dom.
[Graphical view]
Gene3DG3DSA:2.130.10.10. WD40/YVTN_repeat-like. 2 hits.
KOK03351.
PANTHERPTHR13260. PTHR13260. 1 hit.
PfamPF12896. Apc4. 1 hit.
[Graphical view]
PIRSFPIRSF037303. APC4. 1 hit.
SMARTSM00320. WD40. 1 hit.
[Graphical view]
SUPFAMSSF50978. WD40_like. 1 hit.
ProtoNetSearch...

Other

NextBio775563.

Entry information

Entry nameQ9W395_DROME
AccessionPrimary (citable) accession number: Q9W395
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: January 25, 2012
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)