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Protein
Submitted name:

CG7879, isoform A

Gene

CG7879-RB

Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: FlyBase
  • nucleotide binding Source: InterPro

GO - Biological processi

  • regulation of alternative mRNA splicing, via spliceosome Source: FlyBase
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
CG7879, isoform AImported
Submitted name:
CG7879, isoform BImported
Submitted name:
FI22004p1Imported
Gene namesi
Name:CG7879-RBImported
ORF Names:CG7879Imported, Dmel_CG7879Imported
OrganismiDrosophila melanogaster (Fruit fly)Imported
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
ProteomesiUP000000803 Componenti: Chromosome 3L

Organism-specific databases

FlyBaseiFBgn0035235. CG7879.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: FlyBase
Complete GO annotation...

Interactioni

Protein-protein interaction databases

MINTiMINT-286284.
STRINGi7227.FBpp0072706.

Structurei

3D structure databases

ProteinModelPortaliQ9W0D6.
SMRiQ9W0D6. Positions 4-84, 910-982.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00760000119102.
OMAiEDARCAM.

Family and domain databases

Gene3Di3.30.70.330. 5 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 1 hit.
[Graphical view]
SMARTiSM00360. RRM. 5 hits.
[Graphical view]
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9W0D6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVIIRLQNL PWTANARDIR NFFSGLSIPE GGVHIIGGEM GDAFIAFSTD
60 70 80 90 100
EDARCAMLKD REKLMEIQVR LLLSSRAEMQ KVIETARKAA SAQAPVSVPV
110 120 130 140 150
PMPVVVPVTA AKVAGPAAPL PPIIGGLNTF LGQGQVKGVA TGTVPSFLTY
160 170 180 190 200
QQQAGITLSD VTGRRSRSRS SSSDDSDRER ERDRQRERER GRKRRSDRLD
210 220 230 240 250
KSQERELKMV AGGGALPSPW AQPPQNQLPA VGLGLNMGLN LNLPQIPSLQ
260 270 280 290 300
SYTTSTTTTN VTNNYNLEPS ATSVQLLTAL QQVSSGSAAP AQPSKSESEP
310 320 330 340 350
IAFASVNPYA QMYPQLFQQQ QMLLQQQQTQ AKVSPTMGGS PGGGSTPQVV
360 370 380 390 400
ADTCYIRMSG MCQNTSYSDI RKYFQGMYIP HNGIKIMMVN GSRTGVAYVE
410 420 430 440 450
FSRVSSAQKA VQRNNTMFRD RLIQIVPVGD DEFEMAEERA SRQGQDGSRS
460 470 480 490 500
HGNHNGGDRG ERGGGAPVPV PRPVTNVLYI EDLPQTTTEQ DIMKMFSASY
510 520 530 540 550
TVVDILLSPS PKNRRESVAF VLFAREAEAD SALQDTSKHY IGFRQLRVRS
560 570 580 590 600
SSEEDMQNAK EKQRRANEQL LKEEADQREE LLKDQQRRQK QQQQENENIQ
610 620 630 640 650
ANRFAADPRR RQAEDQQQQQ QMNMGPNFNS NMSPNMMAPF VNGGNMPFHM
660 670 680 690 700
PPLQQNGVNN FPFNMNNNYN YNGNSNGNGP NYPNDNGGAG VIQRPRQEDV
710 720 730 740 750
FVRVHNCEYA TRANDLGELF SLEHLRIEHI EQLFNERNQS SGEFIVEFSD
760 770 780 790 800
PASCKLAIRE FHNRRFRGRG LRVVAITPQE IADRMKKPFM DYLPGGNGPR
810 820 830 840 850
KAETNNANDG AGGNKASAQP SRRRGPSRFD KPQEQPSQQQ DRPLSLERED
860 870 880 890 900
NSSTSSNAPV KQHFNPFARP DPPLSSSSLS PSNQGQVKPT SPVPVPTSII
910 920 930 940 950
PDKFNRPGCV VAMRNVPFKA ELKDIMRFFS DYKLSPDDII RRFNDEGKPT
960 970 980
GDTRVAFESP SEARSAFESR RKKQIFNRTV YLDII
Length:985
Mass (Da):109,558
Last modified:May 1, 2000 - v1
Checksum:i217A76F55961EE51
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014296 Genomic DNA. Translation: AAF47513.1.
AE014296 Genomic DNA. Translation: AAF47514.1.
BT150370 mRNA. Translation: AGW52180.1.
RefSeqiNP_647626.1. NM_139369.2.
NP_728631.1. NM_167896.2.
UniGeneiDm.21365.

Genome annotation databases

EnsemblMetazoaiFBtr0072826; FBpp0072706; FBgn0035235.
FBtr0072827; FBpp0072707; FBgn0035235.
GeneIDi38184.
KEGGidme:Dmel_CG7879.
UCSCiCG7879-RA. d. melanogaster.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014296 Genomic DNA. Translation: AAF47513.1.
AE014296 Genomic DNA. Translation: AAF47514.1.
BT150370 mRNA. Translation: AGW52180.1.
RefSeqiNP_647626.1. NM_139369.2.
NP_728631.1. NM_167896.2.
UniGeneiDm.21365.

3D structure databases

ProteinModelPortaliQ9W0D6.
SMRiQ9W0D6. Positions 4-84, 910-982.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

MINTiMINT-286284.
STRINGi7227.FBpp0072706.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiFBtr0072826; FBpp0072706; FBgn0035235.
FBtr0072827; FBpp0072707; FBgn0035235.
GeneIDi38184.
KEGGidme:Dmel_CG7879.
UCSCiCG7879-RA. d. melanogaster.

Organism-specific databases

FlyBaseiFBgn0035235. CG7879.

Phylogenomic databases

GeneTreeiENSGT00760000119102.
OMAiEDARCAM.

Miscellaneous databases

GenomeRNAii38184.
NextBioi807399.

Family and domain databases

Gene3Di3.30.70.330. 5 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 1 hit.
[Graphical view]
SMARTiSM00360. RRM. 5 hits.
[Graphical view]
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The genome sequence of Drosophila melanogaster."
    Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D.
    , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
    Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  3. Cited for: GENOME REANNOTATION.
    Strain: BerkeleyImported.
  4. "The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
    Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
    Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  5. "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
    Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
    Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  6. "Combined evidence annotation of transposable elements in genome sequences."
    Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
    PLoS Comput. Biol. 1:166-175(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  7. Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  8. "Drosophila melanogaster release 4 sequence."
    Berkeley Drosophila Genome Project
    Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
    Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  9. "The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
    Smith C.D., Shu S., Mungall C.J., Karpen G.H.
    Science 316:1586-1591(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  10. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  11. Carlson J., Booth B., Frise E., Park S., Wan K., Yu C., Celniker S.
    Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  12. FlyBase
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ9W0D6_DROME
AccessioniPrimary (citable) accession number: Q9W0D6
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: July 22, 2015
This is version 126 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.