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Q9W0D6

- Q9W0D6_DROME

UniProt

Q9W0D6 - Q9W0D6_DROME

Protein
Submitted name:

CG7879, isoform A

Gene

CG7879-RB

Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 117 (01 Oct 2014)
      Sequence version 1 (01 May 2000)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. mRNA binding Source: FlyBase
    2. nucleotide binding Source: InterPro

    GO - Biological processi

    1. regulation of alternative mRNA splicing, via spliceosome Source: FlyBase

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    CG7879, isoform AImported
    Submitted name:
    CG7879, isoform BImported
    Submitted name:
    FI22004p1Imported
    Gene namesi
    Name:CG7879-RBImported
    ORF Names:CG7879Imported, Dmel_CG7879Imported
    OrganismiDrosophila melanogaster (Fruit fly)Imported
    Taxonomic identifieri7227 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
    ProteomesiUP000000803: Chromosome 3L

    Organism-specific databases

    FlyBaseiFBgn0035235. CG7879.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: FlyBase

    Interactioni

    Protein-protein interaction databases

    MINTiMINT-286284.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00620000087828.
    InParanoidiQ9W0D6.
    OMAiRAEMQKV.

    Family and domain databases

    Gene3Di3.30.70.330. 5 hits.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view]
    PfamiPF00076. RRM_1. 1 hit.
    [Graphical view]
    SMARTiSM00360. RRM. 5 hits.
    [Graphical view]
    PROSITEiPS50102. RRM. 3 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9W0D6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSVIIRLQNL PWTANARDIR NFFSGLSIPE GGVHIIGGEM GDAFIAFSTD    50
    EDARCAMLKD REKLMEIQVR LLLSSRAEMQ KVIETARKAA SAQAPVSVPV 100
    PMPVVVPVTA AKVAGPAAPL PPIIGGLNTF LGQGQVKGVA TGTVPSFLTY 150
    QQQAGITLSD VTGRRSRSRS SSSDDSDRER ERDRQRERER GRKRRSDRLD 200
    KSQERELKMV AGGGALPSPW AQPPQNQLPA VGLGLNMGLN LNLPQIPSLQ 250
    SYTTSTTTTN VTNNYNLEPS ATSVQLLTAL QQVSSGSAAP AQPSKSESEP 300
    IAFASVNPYA QMYPQLFQQQ QMLLQQQQTQ AKVSPTMGGS PGGGSTPQVV 350
    ADTCYIRMSG MCQNTSYSDI RKYFQGMYIP HNGIKIMMVN GSRTGVAYVE 400
    FSRVSSAQKA VQRNNTMFRD RLIQIVPVGD DEFEMAEERA SRQGQDGSRS 450
    HGNHNGGDRG ERGGGAPVPV PRPVTNVLYI EDLPQTTTEQ DIMKMFSASY 500
    TVVDILLSPS PKNRRESVAF VLFAREAEAD SALQDTSKHY IGFRQLRVRS 550
    SSEEDMQNAK EKQRRANEQL LKEEADQREE LLKDQQRRQK QQQQENENIQ 600
    ANRFAADPRR RQAEDQQQQQ QMNMGPNFNS NMSPNMMAPF VNGGNMPFHM 650
    PPLQQNGVNN FPFNMNNNYN YNGNSNGNGP NYPNDNGGAG VIQRPRQEDV 700
    FVRVHNCEYA TRANDLGELF SLEHLRIEHI EQLFNERNQS SGEFIVEFSD 750
    PASCKLAIRE FHNRRFRGRG LRVVAITPQE IADRMKKPFM DYLPGGNGPR 800
    KAETNNANDG AGGNKASAQP SRRRGPSRFD KPQEQPSQQQ DRPLSLERED 850
    NSSTSSNAPV KQHFNPFARP DPPLSSSSLS PSNQGQVKPT SPVPVPTSII 900
    PDKFNRPGCV VAMRNVPFKA ELKDIMRFFS DYKLSPDDII RRFNDEGKPT 950
    GDTRVAFESP SEARSAFESR RKKQIFNRTV YLDII 985
    Length:985
    Mass (Da):109,558
    Last modified:May 1, 2000 - v1
    Checksum:i217A76F55961EE51
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE014296 Genomic DNA. Translation: AAF47513.1.
    AE014296 Genomic DNA. Translation: AAF47514.1.
    BT150370 mRNA. Translation: AGW52180.1.
    RefSeqiNP_647626.1. NM_139369.2.
    NP_728631.1. NM_167896.2.
    UniGeneiDm.21365.

    Genome annotation databases

    EnsemblMetazoaiFBtr0072826; FBpp0072706; FBgn0035235.
    FBtr0072827; FBpp0072707; FBgn0035235.
    GeneIDi38184.
    KEGGidme:Dmel_CG7879.
    UCSCiCG7879-RA. d. melanogaster.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE014296 Genomic DNA. Translation: AAF47513.1 .
    AE014296 Genomic DNA. Translation: AAF47514.1 .
    BT150370 mRNA. Translation: AGW52180.1 .
    RefSeqi NP_647626.1. NM_139369.2.
    NP_728631.1. NM_167896.2.
    UniGenei Dm.21365.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    MINTi MINT-286284.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblMetazoai FBtr0072826 ; FBpp0072706 ; FBgn0035235 .
    FBtr0072827 ; FBpp0072707 ; FBgn0035235 .
    GeneIDi 38184.
    KEGGi dme:Dmel_CG7879.
    UCSCi CG7879-RA. d. melanogaster.

    Organism-specific databases

    FlyBasei FBgn0035235. CG7879.

    Phylogenomic databases

    GeneTreei ENSGT00620000087828.
    InParanoidi Q9W0D6.
    OMAi RAEMQKV.

    Miscellaneous databases

    GenomeRNAii 38184.
    NextBioi 807399.

    Family and domain databases

    Gene3Di 3.30.70.330. 5 hits.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view ]
    Pfami PF00076. RRM_1. 1 hit.
    [Graphical view ]
    SMARTi SM00360. RRM. 5 hits.
    [Graphical view ]
    PROSITEi PS50102. RRM. 3 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of Drosophila melanogaster."
      Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D.
      , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
      Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    3. Cited for: GENOME REANNOTATION.
      Strain: BerkeleyImported.
    4. "The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
      Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
      Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    5. "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
      Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
      Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    6. "Combined evidence annotation of transposable elements in genome sequences."
      Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
      PLoS Comput. Biol. 1:166-175(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    7. Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
      Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    8. "Drosophila melanogaster release 4 sequence."
      Berkeley Drosophila Genome Project
      Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
      Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    9. "The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
      Smith C.D., Shu S., Mungall C.J., Karpen G.H.
      Science 316:1586-1591(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    10. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    11. Carlson J., Booth B., Frise E., Park S., Wan K., Yu C., Celniker S.
      Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    12. FlyBase
      Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.

    Entry informationi

    Entry nameiQ9W0D6_DROME
    AccessioniPrimary (citable) accession number: Q9W0D6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 1, 2000
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 117 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3