Q9W0D6 (Q9W0D6_DROME) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
CG7879, isoform A EMBL AAF47513.1

Submitted name:
CG7879, isoform B EMBL AAF47514.1

Gene names

ORF Names:

CG7879 FlyBase FBgn0035235, Dmel_CG7879 EMBL AAF47513.1

Organism

Drosophila melanogaster (Fruit fly) [Reference proteome]

Taxonomic identifier

7227 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Protostomia › Ecdysozoa › Panarthropoda › Arthropoda › Mandibulata › Pancrustacea › Hexapoda › Insecta › Dicondylia › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Eremoneura › Cyclorrhapha › Schizophora › Acalyptratae › Ephydroidea › Drosophilidae › Drosophilinae › Drosophilini › Drosophilina › Drosophiliti › Drosophila › Sophophora › melanogaster group › melanogaster subgroup

Protein attributes

Sequence length	985 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	regulation of alternative mRNA splicing, via spliceosome Inferred from mutant phenotype PubMed 15492211. Source: FlyBase
Cellular_component	nucleus Inferred by curator PubMed 15492211. Source: FlyBase
Molecular_function	mRNA binding Inferred from sequence or structural similarity PubMed 10908586. Source: FlyBase nucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9W0D6 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: 217A76F55961EE51	FASTA	985	109,558
	10 20 30 40 50 60 MSVIIRLQNL PWTANARDIR NFFSGLSIPE GGVHIIGGEM GDAFIAFSTD EDARCAMLKD 70 80 90 100 110 120 REKLMEIQVR LLLSSRAEMQ KVIETARKAA SAQAPVSVPV PMPVVVPVTA AKVAGPAAPL 130 140 150 160 170 180 PPIIGGLNTF LGQGQVKGVA TGTVPSFLTY QQQAGITLSD VTGRRSRSRS SSSDDSDRER 190 200 210 220 230 240 ERDRQRERER GRKRRSDRLD KSQERELKMV AGGGALPSPW AQPPQNQLPA VGLGLNMGLN 250 260 270 280 290 300 LNLPQIPSLQ SYTTSTTTTN VTNNYNLEPS ATSVQLLTAL QQVSSGSAAP AQPSKSESEP 310 320 330 340 350 360 IAFASVNPYA QMYPQLFQQQ QMLLQQQQTQ AKVSPTMGGS PGGGSTPQVV ADTCYIRMSG 370 380 390 400 410 420 MCQNTSYSDI RKYFQGMYIP HNGIKIMMVN GSRTGVAYVE FSRVSSAQKA VQRNNTMFRD 430 440 450 460 470 480 RLIQIVPVGD DEFEMAEERA SRQGQDGSRS HGNHNGGDRG ERGGGAPVPV PRPVTNVLYI 490 500 510 520 530 540 EDLPQTTTEQ DIMKMFSASY TVVDILLSPS PKNRRESVAF VLFAREAEAD SALQDTSKHY 550 560 570 580 590 600 IGFRQLRVRS SSEEDMQNAK EKQRRANEQL LKEEADQREE LLKDQQRRQK QQQQENENIQ 610 620 630 640 650 660 ANRFAADPRR RQAEDQQQQQ QMNMGPNFNS NMSPNMMAPF VNGGNMPFHM PPLQQNGVNN 670 680 690 700 710 720 FPFNMNNNYN YNGNSNGNGP NYPNDNGGAG VIQRPRQEDV FVRVHNCEYA TRANDLGELF 730 740 750 760 770 780 SLEHLRIEHI EQLFNERNQS SGEFIVEFSD PASCKLAIRE FHNRRFRGRG LRVVAITPQE 790 800 810 820 830 840 IADRMKKPFM DYLPGGNGPR KAETNNANDG AGGNKASAQP SRRRGPSRFD KPQEQPSQQQ 850 860 870 880 890 900 DRPLSLERED NSSTSSNAPV KQHFNPFARP DPPLSSSSLS PSNQGQVKPT SPVPVPTSII 910 920 930 940 950 960 PDKFNRPGCV VAMRNVPFKA ELKDIMRFFS DYKLSPDDII RRFNDEGKPT GDTRVAFESP 970 980 SEARSAFESR RKKQIFNRTV YLDII

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome sequence of Drosophila melanogaster." Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C. Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Berkeley.
[2]	"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review." Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E. Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed] [Europe PMC] [Abstract] Cited for: GENOME REANNOTATION. Strain: Berkeley.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE014296 Genomic DNA. Translation: AAF47513.1. AE014296 Genomic DNA. Translation: AAF47514.1.
RefSeq	NP_647626.1. NM_139369.2. NP_728631.1. NM_167896.2.
UniGene	Dm.21365.
3D structure databases
SMR	Q9W0D6. Positions 4-84, 355-428, 700-779, 910-982.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q9W0D6. 5 interactions.
MINT	MINT-286284.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblMetazoa	FBtr0072826; FBpp0072706; FBgn0035235. FBtr0072827; FBpp0072707; FBgn0035235.
GeneID	38184.
KEGG	dme:Dmel_CG7879.
UCSC	CG7879-RA. d. melanogaster.
Organism-specific databases
FlyBase	FBgn0035235. CG7879.
Phylogenomic databases
GeneTree	ENSGT00620000087828.
InParanoid	Q9W0D6.
OMA	RAEMQKV.
Family and domain databases
Gene3D	3.30.70.330. 5 hits.
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR000504. RRM_dom. [Graphical view]
Pfam	PF00076. RRM_1. 1 hit. [Graphical view]
SMART	SM00360. RRM. 5 hits. [Graphical view]
PROSITE	PS50102. RRM. 3 hits. [Graphical view]
ProtoNet	Search...
Other
GenomeRNAi	38184.
NextBio	807399.

Entry information

Entry name

Q9W0D6_DROME

Accession

Primary (citable) accession number: Q9W0D6

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	May 1, 2013
This is version 105 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)