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Unreviewed, UniProtKB/TrEMBL Q9W0B8 (Q9W0B8_DROME)

Last modified July 7, 2009. Version 79. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information

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Names and origin

Protein namesSubmitted name:
    Alpha-coatomer protein, isoform A EMBL AAF47534.1
Submitted name:
    Alpha-coatomer protein, isoform B EMBL AAF47535.1
    LD46584p EMBL AAL68241.1
Gene names
Name: alphaCop FlyBase FBgn0025725
Synonyms: alpha-Cop FlyBase FBgn0025725
ORF Names: CG7961 FlyBase FBgn0025725, Dmel_CG7961 EMBL AAF47534.1
OrganismDrosophila melanogaster (Fruit fly)
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora

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Protein attributes

Sequence length1234 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at transcript level.

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Sequences

Sequence LengthMass (Da)Tools
Q9W0B8-1 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 0815208E1EC82981

FASTA1,234139,329
        10         20         30         40         50         60 
MLTNFESKSA RVKGLSFHPK RPWILVSLHS GVIQLWDYRM HTLLEKFDEH DGPVRGVAFH 

        70         80         90        100        110        120 
QQMPLFVSGG DDYKIKVWNY KQRRCIFTLL AHLDYVRTVA FHHEYPWILS ASDDQTIRIW 

       130        140        150        160        170        180 
NWQSRNCICV LTGHNHYVMC AQFHPTEDQI VSASLDQTVR VWDISGLRKK NVAPGPGGLD 

       190        200        210        220        230        240 
DHLKGHPGAT DLFGQADAVV KHVLEGHDRG VNWASFHPTL PLIVSGADDR LVKLWRMNEY 

       250        260        270        280        290        300 
KAWEVDTCRG HYNNVSSVLF HPRQDLILSN GEDRSIRVWD MTKRQCLFTF RRDNERFWIL 

       310        320        330        340        350        360 
TAHPTLNLFA AGHDGGMVVF KLERERPAYA VHGNILYYVK ERFLRKLDFT TTKDTVVMQL 

       370        380        390        400        410        420 
RPGKSPVYSM SYNPALNAVL ICTRTNNLEN STYDLCQIPK DTESQSESDS KRSSGITAIW 

       430        440        450        460        470        480 
VARNRFAVLD RNQQLVIKNF KNEVTKKLPT FCEEIFYAGT GMLLIRDPEF VTLYEVQRLV 

       490        500        510        520        530        540 
SVGSIKLAKC RYVVWSPDMS LVALLCKHSV TICDRRLQYL CTVQENCRVK SGAWDESGVF 

       550        560        570        580        590        600 
IYTTSNHIKY AITNGDHGII RTLDLPIYLT RVKGNQVFCL DRECRTRVLH IDPTEYKFKL 

       610        620        630        640        650        660 
ALIQRKYDEV LHMVRNARLV GQSIIAYLQQ KGYPEVALHF VKDEKTRFGL ALECGNIEIA 

       670        680        690        700        710        720 
LEAAKALDDK DCWDRLGQSA LLQGNHQVVE MCYQRTKNFD KLSFLYLITG NLEKLKKMNK 

       730        740        750        760        770        780 
IAEIRKDVSA QYQGALLLGD VKERVNILKN CGQLSLAYLT AATHGFDELT ESLGESITSQ 

       790        800        810        820        830        840 
GNSLPEVNPN AQLLQPPVPI QQLETNWPLL SVSKGFFEGA MVTRAGSSAT ARQALNINAD 

       850        860        870        880        890        900 
AALLDEHNGG GDGWGADADL GLDEDGDDEM HDALSNDGDG GAGGEEGAGW DVGDDDLVVP 

       910        920        930        940        950        960 
EELASKIKAS ALDSNYYAAP NKGLSPAQQW ANNSPLVLDH VKAGSFETAF RLLHDQLGVV 

       970        980        990       1000       1010       1020 
NFQPFKTLFL QNYACSRTSY TANPNLQSLS GYPLRNYSET NIKLQRPAVG IKLNDLVARL 

      1030       1040       1050       1060       1070       1080 
QAGYQLTTSG KFSEAVEKFH SILISIPLLV VDTKLDAAEA QQLLRICAEY IVGLKMETVR 

      1090       1100       1110       1120       1130       1140 
KGMPKSTLEE QKRLCEMAAY FTHCKLQPVH QILTLRTALN MFFKLKNYKT AASFARRLLE 

      1150       1160       1170       1180       1190       1200 
LAPRPDVAQQ VRKILQACEV NPVDEHQLQY EEFNPFTICG ISWKPLYRGK PEVTCPFCSS 

      1210       1220       1230 
SFDPQFKGNL CTVCEVSQIG KDSIGLRISN LQFR

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References

« Hide 'large scale' references
[1]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[2]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[3]Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J., Champe M., Chavez C., Dorsett V., Dresnek D., Farfan D., Frise E., George R., Gonzalez M., Guarin H., Kronmiller B., Li P., Liao G., Miranda A. expand/collapse author list , Mungall C.J., Nunoo J., Pacleb J., Paragas V., Park S., Patel S., Phouanenavong S., Wan K., Yu C., Lewis S.E., Rubin G.M., Celniker S.
Submitted (JAN-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley EMBL AAL68241.1.

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Cross-references

Sequence databases

AE014296 Genomic DNA. Translation: AAF47534.1.
AE014296 Genomic DNA. Translation: AAF47535.1.
AY075425 mRNA. Translation: AAL68241.1.
RefSeqNP_477395.1.
NP_728648.1.
UniGeneDm.2217

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

IntActQ9W0B8. 4 interactions.

Proteomic databases

PRIDEQ9W0B8.

Genome annotation databases

EnsemblFBgn0025725. Drosophila melanogaster. [Contig view]
GeneID38199.
KEGGdme:Dmel_CG7961.

Organism-specific databases

FlyBaseFBgn0025725. alphaCop.

Phylogenomic databases

OMAQ9W0B8. GYKATTT.

Gene expression databases

ArrayExpressQ9W0B8.

Family and domain databases

InterProIPR016391. Coatomer_alpha_subunit.
IPR010714. Coatomer_asu_C.
IPR006692. Coatomer_WD-assoc_reg.
IPR015943. WD40/YVTN_repeat-like.
IPR001680. WD40_repeat.
IPR019782. WD40_repeat_2.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_region.
IPR019781. WD40_repeat_sg.
[Graphical view]
Gene3DG3DSA:2.130.10.10. WD40/YVTN_repeat-like. 1 hit.
PfamPF04053. Coatomer_WDAD. 1 hit.
PF06957. COPI_C. 1 hit.
PF00400. WD40. 5 hits.
[Graphical view]
PIRSFPIRSF003354. Coatomer_alpha_subunit. 1 hit.
ProDomPD000018. WD40. 5 hits.
[Graphical view] [Entries sharing at least one domain]
SMARTSM00320. WD40. 7 hits.
[Graphical view]
PROSITEPS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

NextBio807477.

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Entry information

Entry nameQ9W0B8_DROME
AccessionPrimary (citable) accession number: Q9W0B8
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: July 7, 2009
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information