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Q9VYF3 (Q9VYF3_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 96. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
FI19806p1 EMBL AFH55501.1
Submitted name:
HDAC4, isoform D EMBL AAF48245.3
EC=3.5.1.- EMBL AAF48245.3
Gene names
Name:HDAC4 FlyBase FBgn0041210
Synonyms:HDAC4-RD EMBL AFH55501.1
ORF Names:Dmel_CG1770 EMBL AAF48245.3
OrganismDrosophila melanogaster (Fruit fly) [Reference proteome]
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Ecdysozoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora ›

Protein attributes

Sequence length1252 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q9VYF3 [UniParc].

Last modified November 30, 2010. Version 3.
Checksum: C6FE30273DDC1EC5

FASTA1,252134,162
        10         20         30         40         50         60 
MSSPDDRIPI HDLPSEAGSD ERLLHITPAT LTLDFKPHPA VDIDQQIMEL KKSQELQKQR 

        70         80         90        100        110        120 
LINSFQEQSK QMELEHKLQL EHKYQFAVNS HGAFQELRNE SMVTAAAAAV AQEQHRQQLH 

       130        140        150        160        170        180 
QQQQQHQQQQ QQQQHQQQQQ QQQARGRDGM KLKQNCSANA SPEVKQILNC FILSRKSQAA 

       190        200        210        220        230        240 
ASNGTTTTSP YRNRGVVKSS SGESLPAGTV TSAHPYKIPQ PPPSLLKYES DFPLRKTASE 

       250        260        270        280        290        300 
PNLLKIRLKQ SVIERKARIG GPAGARRHER LLQAAQRRQQ KNSVLTNCNS TPDSGPNSPP 

       310        320        330        340        350        360 
SAAALAVGVV GSRGSPTSAP IQEENEEGSQ YQPGQRSSIN DLPLFSSPSL PNISLGRPHL 

       370        380        390        400        410        420 
PNSAQAHAQV NAQVAAQAQA QAQAQAQAHA MFAALAAAQG GCGQPGYYNP LGMAFVGRQP 

       430        440        450        460        470        480 
APLAMIPATG IAPQQPSPVV RSASATSTSS SQASLVGDVA PPQAHAASTI LPSSSSYMQQ 

       490        500        510        520        530        540 
LGSVAGSGVN LHAAAVAAAA AAAAAAGSLP PTNSHGHGHG SHAHPHPHAH GHGHGHGHGI 

       550        560        570        580        590        600 
YAGHQHNVPI TDAQVAQVHL HKQGHRPLGR TQSAPLPLGH PMLTGAVQLN VVQTHYENSE 

       610        620        630        640        650        660 
AERQAYEHQV VNQKVRQTVL TRSGAAAAAA AAAGVSVVRE AQLKEEDDDS AAEVMDLTDK 

       670        680        690        700        710        720 
KKPPKTVLTS TIATSTSQNL PEALAAAAAA AAYRAPHNAS SNSASATKSG IKLRDQEYLQ 

       730        740        750        760        770        780 
QQREQLLLLQ QEEELAKSLM RPLSRTLSSP LVPLGPHGLS QIPDTGQQPA PIATSSSADH 

       790        800        810        820        830        840 
IPPVNLSLPH RQHRQLMSTL YASQLRNHQP SASGSPPHKV TTGLAYDPLM LKHSCICGDN 

       850        860        870        880        890        900 
AQHPEHSGRL QSVWARLNET DLVKRCDRLR ARKATQEELQ TVHTEAHAML FGSNQCQLSR 

       910        920        930        940        950        960 
PKLENTLSAS FVRLSCGGLG VDLDTTWNEH HTATAARMAA GCVIDLALKT AKGDLRNGFA 

       970        980        990       1000       1010       1020 
VVRPPGHHAE ANLAMGFCFF NSIAIAAKLL RQRMPEVRRI LIVDWDVHHG NGTQQAFYQS 

      1030       1040       1050       1060       1070       1080 
PDILYLSIHR HDDGNFFPGT GGPTECGSGA GLGFNVNISW SGALNPPLGD AEYIAAFRTV 

      1090       1100       1110       1120       1130       1140 
VMPIARSFNP DIVLVSSGFD AATGHPAPLG GYHVSPACFG FMTRELLQLA NGKVVLALEG 

      1150       1160       1170       1180       1190       1200 
GYDLAAICDS AQECVRALLG DPAAPIAKAE LERPPCQNAI NTLQKTIAIQ QTHWPCVRML 

      1210       1220       1230       1240       1250 
EHTVGLSALE TLKVEHDESE TINAMAGLSM QSMHRTLSRD DSEEPMDQDE TK

« Hide

References

« Hide 'large scale' references
[1]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[2]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: Berkeley.
[3]Carlson J., Booth B., Frise E., Park S., Wan K., Yu C., Celniker S.
Submitted (APR-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE014298 Genomic DNA. Translation: AAF48245.3.
BT133402 mRNA. Translation: AFH55501.1.
RefSeqNP_572868.3. NM_132640.5.

3D structure databases

SMRQ9VYF3. Positions 821-1198.
ModBaseSearch...

Protein-protein interaction databases

IntActQ9VYF3. 1 interaction.
MINTMINT-1579842.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0301298; FBpp0290513; FBgn0041210.
GeneID32278.
KEGGdme:Dmel_CG1770.
UCSCCG1770-RA. d. melanogaster.

Organism-specific databases

CTD9759.
FlyBaseFBgn0041210. HDAC4.

Phylogenomic databases

GeneTreeENSGT00530000062809.
InParanoidQ9VYF3.
KOK11406.
OMACICGDNA.

Family and domain databases

Gene3D3.40.800.20. 1 hit.
InterProIPR000286. His_deacetylse.
IPR023801. His_deacetylse_dom.
IPR017320. Histone_deAcase_II_euk.
[Graphical view]
PANTHERPTHR10625. PTHR10625. 1 hit.
PfamPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFPIRSF037911. HDAC_II_euk. 1 hit.
PRINTSPR01270. HDASUPER.
ProtoNetSearch...

Other

GenomeRNAi32278.
NextBio777716.

Entry information

Entry nameQ9VYF3_DROME
AccessionPrimary (citable) accession number: Q9VYF3
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: November 30, 2010
Last modified: May 1, 2013
This is version 96 of the entry and version 3 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info