Q9VW51 (Q9VW51_DROME) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
LD12841p EMBL ACM16731.1

Submitted name:
LD19974p EMBL ACI88733.1
Submitted name:
Su(Tpl), isoform A EMBL AAF49098.3
Submitted name:
Su(Tpl), isoform B EMBL ACZ94748.1

Gene names

Name:	Su(Tpl) FlyBase FBgn0014037 EMBL AAF49098.3
Synonyms:	Su(Tpl)-RA EMBL ACI88733.1
ORF Names:	Dmel_CG32217 EMBL AAF49098.3

Organism

Drosophila melanogaster (Fruit fly)

Taxonomic identifier

7227 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora

Protein attributes

Sequence length	1059 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	regulation of DNA-dependent transcription in response to stress Inferred from mutant phenotype. Source: FlyBase transcription elongation from RNA polymerase II promoter Inferred from electronic annotation. Source: InterPro wing disc dorsal/ventral pattern formation Inferred from genetic interaction. Source: FlyBase
Cellular component	polytene chromosome Inferred from direct assay. Source: FlyBase transcription elongation factor complex Inferred from electronic annotation. Source: InterPro
Molecular function	protein binding Inferred from physical interaction. Source: UniProtKB
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9VW51 [UniParc]. Last modified July 5, 2004. Version 3. Checksum: 07863C7ABEA17911	FASTA	1,059	114,915
	10 20 30 40 50 60 MTNSIASTKC LPNALSTGNY GMSQSHRYTD DSKEYIIVKL TDSAFRAIEE YQRDDNAKRL 70 80 90 100 110 120 QPGQRAKIQF VGNTGVIQFP RPATDANGIP NANGNGSDAT GAGGGGGRKF GFTINNMEGT 130 140 150 160 170 180 LECVQQQQRS LGVLGAVTLR MRIHANEDVY DSTRTKMAIA EETEKSKCIR EIKPNQSDIG 190 200 210 220 230 240 RKVKKPPSAI QSSASTASAF SSNSSNSGLT TTAFHHHSNS NNSGNNNNRS SSSSNSFNSN 250 260 270 280 290 300 NHSRKLGSSP FNGLGVGSSS SSSAFASRSP NPSTLGAIGT VNGSGVVGGR YGGGAASSLA 310 320 330 340 350 360 STFANGISQG YHNLSGSSPR DSMTAGTSSA TASSVISSRN KMPSGGLTSS NSNSSSSSRS 370 380 390 400 410 420 ANSKSSGGNK MSDVSRRNIR ERLIHLLALK AFKKPELFAR LKNEGIRDRE RNQITNILMD 430 440 450 460 470 480 ISTMSHNTYN LRRQMWNDVD ENWPFFSEQE VQQLKRRKPQ NLTPPMSSDA GSSTSGQSPT 490 500 510 520 530 540 STHTGSPPPP SSNGGPGGVG SGAGGTSMKR TSLEYDETMF STVQPKKQRI SHYKKDTPPS 550 560 570 580 590 600 GTSYSSAGVS MSLGSSGSSS RSRYTPPQRQ PGPLDDHSTT DLSYNVLDNI VEFMSSTAAA 610 620 630 640 650 660 TQQSMEQQQH PRSNSSNNRR GSSSLAGTSN GGNNKDKRNS TGSNSSSSSG YETQQDRQRS 670 680 690 700 710 720 TTPMSSNRSS ASSSTTPPKL AASFVPAATS GSASGTSKQR MPPQQSDYNS YNSNNAQHVA 730 740 750 760 770 780 SNSKKRMGSV GPSGGSNGQR QRSASGSNSG YQQVPPPSSN SRSSIQQQNQ HQKQQVQQKQ 790 800 810 820 830 840 APSQQQQQQQ QQYHQQAKHP SPSQQLAAAA HAYAHATADT DSSATPRYDF SQYVPIQTLE 850 860 870 880 890 900 VRRRYKTEFE SDYDEYRKLL TRVEDVRNRF QDLSERLESA RRCDNGYGDY DHIKRQIVCE 910 920 930 940 950 960 YERINNDRTI GEDKERFDYL HAKLAHIKQL VMDYDKTLMS ATMAMAPTDV VAAQGPDPAV 970 980 990 1000 1010 1020 AKAAARLAEH HRRQHHAAET IKQQQQQKQT HQHHLQRHLQ HHLQQQQNLL QQQQNLLQQQ 1030 1040 1050 SVSNSDDSSD SSDSNDDDDD DDEDCDDSNS NTDDDEARY

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The Release 5.1 annotation of Drosophila melanogaster heterochromatin." Smith C.D., Shu S., Mungall C.J., Karpen G.H. Science 316:1586-1591(2007) [PubMed: 17569856] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Sequence finishing and mapping of Drosophila melanogaster heterochromatin." Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M., Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A., Dimitri P., Karpen G.H., Celniker S.E. Science 316:1625-1628(2007) [PubMed: 17569867] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[3]	"The genome sequence of Drosophila melanogaster." Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C. Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Berkeley.
[4]	"Combined evidence annotation of transposable elements in genome sequences." Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D. PLoS Comput. Biol. 1:166-175(2005) [PubMed: 16110336] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[5]	"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review." Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E. Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Berkeley.
[6]	"Heterochromatic sequences in a Drosophila whole-genome shotgun assembly." Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H. Genome Biol. 3:RESEARCH0085.1-RESEARCH0085.16(2002) [PubMed: 12537574] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[7]	"The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective." Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J.W., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E. Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) [PubMed: 12537573] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[8]	"Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence." Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A., Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A., George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R., Pacleb J.M., Park S. , Pfeiffer B.D., Richards S., Sodergren E.J., Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C., Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M. Genome Biol. 3 (12), RESEARCH0079 (2002) Cited for: NUCLEOTIDE SEQUENCE.
[9]	Carlson J., Booth B., Frise E., Park S., Wan K., Yu C., Celniker S. Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Berkeley EMBL ACI88733.1.
[10]	Drosophila Heterochromatin Genome Project Smith C.D., Shu S., Mungall C.J., Karpen G.H. Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[11]	Carlson J., Booth B., Frise E., Park S., Wan K., Yu C., Celniker S. Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Berkeley EMBL ACM16731.1.
[12]	FlyBase Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[13]	Celniker S., Carlson J., Kennedy C., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Karpen G. Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[14]	Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G. Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[15]	"Drosophila melanogaster release 4 sequence." Berkeley Drosophila Genome Project Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G. Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE014296 Genomic DNA. Translation: AAF49098.3. BT050407 mRNA. Translation: ACI88733.1. BT058015 mRNA. Translation: ACM16731.1. AE014296 Genomic DNA. Translation: ACZ94748.1.
RefSeq	NP_001163477.1. NM_001170006.1. NP_649155.3. NM_140898.4.
UniGene	Dm.33434.
3D structure databases
ProteinModelPortal	Q9VW51.
SMR	Q9VW51. Positions 368-468, 827-937.
ModBase	Search...
Protein-protein interaction databases
MINT	MINT-817794.
STRING	Q9VW51.
Proteomic databases
PRIDE	Q9VW51.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblMetazoa	FBtr0074920; FBpp0074689; FBgn0014037. FBtr0302047; FBpp0291257; FBgn0014037.
GeneID	40171.
KEGG	dme:Dmel_CG32217.
NMPDR	fig|7227.3.peg.10631.
UCSC	CG32217-RA. d. melanogaster.
Organism-specific databases
CTD	40171.
FlyBase	FBgn0014037. Su(Tpl).
Phylogenomic databases
GeneTree	EMGT00050000001435.
InParanoid	Q9VW51.
OMA	HAKLAHI.
PhylomeDB	Q9VW51.
Gene expression databases
ArrayExpress	Q9VW51.
Bgee	Q9VW51.
Family and domain databases
InterPro	IPR010844. Occludin_RNApol2_elong_fac_ELL. IPR019464. RNA_pol_II_elong_fac_ELL. [Graphical view]
KO	K15183.
Pfam	PF10390. ELL. 1 hit. PF07303. Occludin_ELL. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	817391.

Entry information

Entry name

Q9VW51_DROME

Accession

Primary (citable) accession number: Q9VW51

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	July 5, 2004
Last modified:	January 25, 2012
This is version 75 of the entry and version 3 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)