Q9VUD3 (Q9VUD3_DROME) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
GH07353p EMBL AAL13542.1

Submitted name:
Sox21b EMBL AAF49754.2

Gene names

Name:	Sox21b EMBL AAF49754.2 FlyBase FBgn0042630
Synonyms:	sox-like EMBL AAL13542.1
ORF Names:	CG32139 FlyBase FBgn0042630, Dmel_CG32139 EMBL AAF49754.2

Organism

Drosophila melanogaster (Fruit fly)

Taxonomic identifier

7227 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora

Protein attributes

Sequence length	571 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Ligand	DNA-binding SAAS SAAS000910
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9VUD3 [UniParc]. Last modified October 1, 2002. Version 2. Checksum: 123F3C1C3AACAF29	FASTA	571	60,909
	10 20 30 40 50 60 MMERLSTHLS LTGLSLAHPL QTHLGSGGGT HHLGQLAAAV HQQQQQQQQS DQGLGHSHHL 70 80 90 100 110 120 HGQQLSLNHQ HHHPHQSPQH QQQHQHHPCS SNSSNGSPNG STGLGLHPHS ALHLAHHHSQ 130 140 150 160 170 180 LHQHHPAGQQ QQHSQPPVSS SSTSHHSQSQ ALSHQTHSNG SSQLGGGSAS GAGSVAGGAA 190 200 210 220 230 240 NSHHSAPASS SVMAAAAAAH LHHNSQASPI SNLHQNMGSL MNSGSSASDV FFSLMIQNTT 250 260 270 280 290 300 KRQNEEHIKR PMNAFMVWSR LQRRKIAQDN PKMHNSEISK RLGAEWKLLT EEEKRPFIDE 310 320 330 340 350 360 AKRLRAMHMK EHPDYKYRPR RKPKALRRDG YPYPMPYPSV PVEALRAGIT PGYFAPGPTA 370 380 390 400 410 420 AAYHLGSHLG QTSTPTTTQA TLSGQMDKFA LERSSYLSNS SQASAYSAYL DPSVLTKAYF 430 440 450 460 470 480 DSKMYQDRAA NYAFDISKIY GAQQHAAAHH QQQQQQQQQQ QQQQQQLLLS GGGGSGGGGS 490 500 510 520 530 540 ASSHNNNSSS GLDDRDATPQ LEAVESKPHL HSPSDVGLDY AQYAQQYGGQ LAAAAGGAVG 550 560 570 GGAAGAAGGS AGGGSGGATA ADFRRPLTVI F

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome sequence of Drosophila melanogaster." Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C. Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Berkeley.
[2]	"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review." Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E. Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Berkeley.
[3]	Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J., Champe M., Chavez C., Dorsett V., Farfan D., Frise E., George R., Gonzalez M., Guarin H., Li P., Liao G., Miranda A., Mungall C.J., Nunoo J. , Pacleb J., Paragas V., Park S., Phouanenavong S., Wan K., Yu C., Lewis S.E., Rubin G.M., Celniker S. Submitted (OCT-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Berkeley EMBL AAL13542.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE014296 Genomic DNA. Translation: AAF49754.2. AY058313 mRNA. Translation: AAL13542.1.
RefSeq	NP_648695.1. NM_140438.2.
UniGene	Dm.955.
3D structure databases
HSSP	HSSP built from PDB template 1GT0 based on UniProtKB P48432.
ProteinModelPortal	Q9VUD3.
SMR	Q9VUD3. Positions 246-322.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q9VUD3. 11 interactions.
MINT	MINT-324417.
STRING	Q9VUD3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblMetazoa	FBtr0075747; FBpp0075489; FBgn0042630.
GeneID	39569.
KEGG	dme:Dmel_CG32139.
NMPDR	fig|7227.3.peg.9792.
UCSC	CG32139-RA. d. melanogaster.
Organism-specific databases
CTD	406246.
FlyBase	FBgn0042630. Sox21b.
Phylogenomic databases
eggNOG	inNOG10327.
GeneTree	EMGT00050000001406.
InParanoid	Q9VUD3.
OMA	NEEHIKR.
OrthoDB	EOG4HHMJQ.
PhylomeDB	Q9VUD3.
Gene expression databases
ArrayExpress	Q9VUD3.
Bgee	Q9VUD3.
Family and domain databases
InterPro	IPR000910. HMG_HMG1/HMG2. IPR009071. HMG_superfamily. [Graphical view]
Gene3D	G3DSA:1.10.30.10. HMG-box. 1 hit.
Pfam	PF00505. HMG_box. 1 hit. [Graphical view]
SMART	SM00398. HMG. 1 hit. [Graphical view]
SUPFAM	SSF47095. HMG-box. 1 hit.
PROSITE	PS50118. HMG_BOX_2. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	814314.

Entry information

Entry name

Q9VUD3_DROME

Accession

Primary (citable) accession number: Q9VUD3
Secondary accession number(s): Q95U47

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	October 1, 2002
Last modified:	January 25, 2012
This is version 91 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)