Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q9VSC2 (Q9VSC2_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 96. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names

RE39081p EMBL AAL89903.1
Gene names
Name:exex FlyBase FBgn0041156 EMBL AAF50503.1
ORF Names:CG8254 FlyBase FBgn0041156 EMBL AAL89903.1, Dmel_CG8254 EMBL AAF50503.1
OrganismDrosophila melanogaster (Fruit fly)
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryotaMetazoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora

Protein attributes

Sequence length525 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subcellular location

Nucleus By similarity RuleBase RU000682.

Sequences

Sequence LengthMass (Da)Tools
Q9VSC2 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 2F361B164D982EFE

FASTA52556,770
        10         20         30         40         50         60 
MSSAQVSQQP PPPPLTASSS TSMPSQLLLS HIQHHSSSLH HQRSHQRSSP PAQDYDQGSN 

        70         80         90        100        110        120 
QSTLSPRSQI TPSPPAASPT HSAATTGSPV STYTPALSPG GAQDSSQTES GQSSQMPLLV 

       130        140        150        160        170        180 
APMPVGTGPP HSHPPPPHPR LYVEGFPPPH HVPHPHPALG TYPLPRLPLM LPANPPGVPS 

       190        200        210        220        230        240 
GAAAPPPVSP QPAANHLSHS GATMATTTLL PPAQSQPKKS FCIDALLAKS QHQSGEPQPI 

       250        260        270        280        290        300 
IVDDRLAALH YARDQAELNH AFVTASNAAA AAQAAASAAG GISEQEALQR IRDSREYDSP 

       310        320        330        340        350        360 
SPDGMSRSES PTSSHRSSPP ISPGCEDQQQ PHGALHPQHL SMRMSDFHDE FKKPIPPHSP 

       370        380        390        400        410        420 
IRPQDFPLYA GGHPYQLLAQ GGSAFHRPLD PSGKPIPIPM GHNFMPSQLQ FEFLARAGML 

       430        440        450        460        470        480 
HHRIPELAAY PHHAILGKTR RPRTAFTSQQ LLELEKQFKQ NKYLSRPKRF EVASGLMLSE 

       490        500        510        520 
TQVKIWFQNR RMKWKRSKKA QQEAKERAKA NQQQQQQQQT PSAAS 

« Hide

References

« Hide 'large scale' references
[1]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[2]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley.
[3]Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J., Champe M., Chavez C., Dorsett V., Dresnek D., Farfan D., Frise E., George R., Gonzalez M., Guarin H., Kronmiller B., Li P., Liao G., Miranda A. expand/collapse author list , Mungall C.J., Nunoo J., Pacleb J., Paragas V., Park S., Patel S., Phouanenavong S., Wan K., Yu C., Lewis S.E., Rubin G.M., Celniker S.
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley EMBL AAL89903.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE014296 Genomic DNA. Translation: AAF50503.1.
AY084165 mRNA. Translation: AAL89903.1.
RefSeqNP_648164.1. NM_139907.2.
UniGeneDm.5205.

3D structure databases

HSSPHSSP built from PDB template 1B72 based on UniProtKB P14653.
ProteinModelPortalQ9VSC2.
SMRQ9VSC2. Positions 443-499.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ9VSC2.

Proteomic databases

PRIDEQ9VSC2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0076751; FBpp0076468; FBgn0041156.
GeneID38884.
KEGGdme:Dmel_CG8254.
NMPDRfig|7227.3.peg.8763.
UCSCCG8254-RA. d. melanogaster.

Organism-specific databases

CTD38884.
FlyBaseFBgn0041156. exex.

Phylogenomic databases

eggNOGinNOG11499.
GeneTreeEMGT00070000025675.
InParanoidQ9VSC2.
OMAHHRIPEL.
OrthoDBEOG431ZFJ.
PhylomeDBQ9VSC2.

Gene expression databases

ArrayExpressQ9VSC2.
BgeeQ9VSC2.

Family and domain databases

InterProIPR001356. Homeobox.
IPR017970. Homeobox_CS.
IPR020479. Homeobox_eu.
IPR009057. Homeodomain-like.
IPR012287. Homeodomain-rel.
[Graphical view]
Gene3DG3DSA:1.10.10.60. Homeodomain-rel. 1 hit.
PfamPF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSPR00024. HOMEOBOX.
SMARTSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMSSF46689. Homeodomain_like. 1 hit.
PROSITEPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio810844.

Entry information

Entry nameQ9VSC2_DROME
AccessionPrimary (citable) accession number: Q9VSC2
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: January 25, 2012
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)