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Protein

60S ribosomal protein L18

Gene

RpL18

Organism
Drosophila melanogaster (Fruit fly)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: GO_Central
  • structural constituent of ribosome Source: FlyBase

GO - Biological processi

  • cytoplasmic translation Source: FlyBase
  • translation Source: GO_Central
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-DME-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-DME-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-DME-72689. Formation of a pool of free 40S subunits.
R-DME-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-DME-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-DME-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L18
Gene namesi
Name:RpL18
ORF Names:CG8615
OrganismiDrosophila melanogaster (Fruit fly)
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome 3L

Organism-specific databases

FlyBaseiFBgn0035753. RpL18.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: GO_Central
  • cytosolic ribosome Source: FlyBase
  • ribosome Source: FlyBase
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002916281 – 18860S ribosomal protein L18Add BLAST188

Proteomic databases

PaxDbiQ9VS34.
PRIDEiQ9VS34.

Expressioni

Gene expression databases

BgeeiFBgn0035753.
ExpressionAtlasiQ9VS34. baseline.
GenevisibleiQ9VS34. DM.

Interactioni

Protein-protein interaction databases

BioGridi64237. 5 interactors.
IntActiQ9VS34. 13 interactors.
MINTiMINT-856295.
STRINGi7227.FBpp0076602.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V6Welectron microscopy6.00CQ1-188[»]
ProteinModelPortaliQ9VS34.
SMRiQ9VS34.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L18e family.Curated

Phylogenomic databases

eggNOGiKOG1714. Eukaryota.
COG1727. LUCA.
GeneTreeiENSGT00390000012976.
InParanoidiQ9VS34.
KOiK02883.
OMAiAYEVPKL.
OrthoDBiEOG091G07WU.
PhylomeDBiQ9VS34.

Family and domain databases

InterProiIPR000039. Ribosomal_L18e.
IPR021131. Ribosomal_L18e/L15P.
IPR021132. Ribosomal_L18e_CS.
[Graphical view]
PANTHERiPTHR10934. PTHR10934. 1 hit.
PfamiPF17135. Ribosomal_L18. 1 hit.
[Graphical view]
SUPFAMiSSF52080. SSF52080. 1 hit.
PROSITEiPS01106. RIBOSOMAL_L18E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9VS34-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGIDINHKYD RKVRRTEPKS QDVYLRLLVK LYRFLQRRTN KKFNRIILKR
60 70 80 90 100
LFMSKINRPP LSLQRIARFF KAANQPESTI VVVGTVTDDA RLLVVPKLTV
110 120 130 140 150
CALHVTQTAR ERILKAGGEV LTFDQLALRS PTGKNTLLLQ GRRTARTACK
160 170 180
HFGKAPGVPH SHTRPYVRSK GRKFERARGR RSSCGYKK
Length:188
Mass (Da):21,665
Last modified:May 1, 2000 - v1
Checksum:i2C1818189704FB9E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014296 Genomic DNA. Translation: AAF50596.1.
AY113554 mRNA. Translation: AAM29559.1.
BT030448 mRNA. Translation: ABP87890.1.
RefSeqiNP_001261501.1. NM_001274572.1.
NP_001286966.1. NM_001300037.1.
NP_648091.1. NM_139834.3.
UniGeneiDm.7265.
Dm.7423.

Genome annotation databases

EnsemblMetazoaiFBtr0076892; FBpp0076602; FBgn0035753.
FBtr0333370; FBpp0305562; FBgn0035753.
FBtr0345036; FBpp0311286; FBgn0035753.
GeneIDi38794.
KEGGidme:Dmel_CG8615.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014296 Genomic DNA. Translation: AAF50596.1.
AY113554 mRNA. Translation: AAM29559.1.
BT030448 mRNA. Translation: ABP87890.1.
RefSeqiNP_001261501.1. NM_001274572.1.
NP_001286966.1. NM_001300037.1.
NP_648091.1. NM_139834.3.
UniGeneiDm.7265.
Dm.7423.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V6Welectron microscopy6.00CQ1-188[»]
ProteinModelPortaliQ9VS34.
SMRiQ9VS34.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi64237. 5 interactors.
IntActiQ9VS34. 13 interactors.
MINTiMINT-856295.
STRINGi7227.FBpp0076602.

Proteomic databases

PaxDbiQ9VS34.
PRIDEiQ9VS34.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiFBtr0076892; FBpp0076602; FBgn0035753.
FBtr0333370; FBpp0305562; FBgn0035753.
FBtr0345036; FBpp0311286; FBgn0035753.
GeneIDi38794.
KEGGidme:Dmel_CG8615.

Organism-specific databases

CTDi6141.
FlyBaseiFBgn0035753. RpL18.

Phylogenomic databases

eggNOGiKOG1714. Eukaryota.
COG1727. LUCA.
GeneTreeiENSGT00390000012976.
InParanoidiQ9VS34.
KOiK02883.
OMAiAYEVPKL.
OrthoDBiEOG091G07WU.
PhylomeDBiQ9VS34.

Enzyme and pathway databases

ReactomeiR-DME-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-DME-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-DME-72689. Formation of a pool of free 40S subunits.
R-DME-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-DME-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-DME-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

ChiTaRSiRpL18. fly.
GenomeRNAii38794.
PROiQ9VS34.

Gene expression databases

BgeeiFBgn0035753.
ExpressionAtlasiQ9VS34. baseline.
GenevisibleiQ9VS34. DM.

Family and domain databases

InterProiIPR000039. Ribosomal_L18e.
IPR021131. Ribosomal_L18e/L15P.
IPR021132. Ribosomal_L18e_CS.
[Graphical view]
PANTHERiPTHR10934. PTHR10934. 1 hit.
PfamiPF17135. Ribosomal_L18. 1 hit.
[Graphical view]
SUPFAMiSSF52080. SSF52080. 1 hit.
PROSITEiPS01106. RIBOSOMAL_L18E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL18_DROME
AccessioniPrimary (citable) accession number: Q9VS34
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 26, 2007
Last sequence update: May 1, 2000
Last modified: November 30, 2016
This is version 116 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programDrosophila annotation project

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Drosophila
    Drosophila: entries, gene names and cross-references to FlyBase
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.