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Q9VQ08 (Q9VQ08_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 116. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Protein attributes

Sequence length1463 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   DomainRepeat SAAS SAAS013098
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processaxon guidance

Inferred from mutant phenotype PubMed 11163264PubMed 11163265PubMed 15056612. Source: FlyBase

cardioblast cell fate specification

Inferred from mutant phenotype PubMed 16888037. Source: FlyBase

central complex development

Inferred from mutant phenotype PubMed 16003521. Source: FlyBase

embryonic heart tube development

Inferred from mutant phenotype PubMed 16360689PubMed 16516189PubMed 16888037. Source: FlyBase

gonad development

Inferred from mutant phenotype PubMed 21377458. Source: FlyBase

mushroom body development

Inferred from mutant phenotype PubMed 16003521. Source: FlyBase

neuron migration

Inferred from mutant phenotype PubMed 15296748. Source: FlyBase

outflow tract morphogenesis

Inferred from genetic interaction PubMed 18250318. Source: FlyBase

positive regulation of cell-cell adhesion

Inferred from mutant phenotype PubMed 16888037. Source: FlyBase

regulation of epithelial cell migration, open tracheal system

Inferred from mutant phenotype PubMed 12397103. Source: FlyBase

salivary gland boundary specification

Inferred from mutant phenotype PubMed 15950216. Source: FlyBase

synaptic target recognition

Inferred from mutant phenotype PubMed 18817735. Source: FlyBase

tracheal outgrowth, open tracheal system

Traceable author statement PubMed 12791296. Source: FlyBase

ventral cord development

Inferred from mutant phenotype PubMed 11163264PubMed 11163265. Source: FlyBase

   Cellular_componentaxon

Inferred from direct assay PubMed 19874787. Source: FlyBase

   Molecular_functionprotein homodimerization activity

Inferred from direct assay PubMed 20206526. Source: FlyBase

receptor activity

Traceable author statement PubMed 12885551. Source: FlyBase

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q9VQ08 [UniParc].

Last modified October 1, 2002. Version 2.
Checksum: 177A21647E6BD5A9

FASTA1,463159,977
        10         20         30         40         50         60 
MHLCEMRGMP LRLQPQCLTN ESEIQIKIKS KIKNKTASEI KRRHRNNRDF HGERLKIMPV 

        70         80         90        100        110        120 
DRSRRAVFPL LLLLAGLNGL TQVGALKGEN PRIIEHPMDT TVPKNDPFTF NCQAEGNPTP 

       130        140        150        160        170        180 
TIQWFKDGRE LKTDTGSHRI MLPAGGLFFL KVIHSRRESD AGTYWCEAKN EFGVARSRNA 

       190        200        210        220        230        240 
TLQVAFLRDE FRLEPANTRV AQGEVALMEC GAPRGSPEPQ ISWRKNGQTL NLVGNKRIRI 

       250        260        270        280        290        300 
VDGGNLAIQE ARQSDDGRYQ CVVKNVVGTR ESATAFLKVH VRPFLIRGPQ NQTAVVGSSV 

       310        320        330        340        350        360 
VFQCRIGGDP LPDVLWRRTA SGGNMPLRRV HVLEDRSLKL DDVTLEDMGE YTCEADNAVG 

       370        380        390        400        410        420 
GITATGILTV HAPPKFVIRP KNQLVEIGDE VLFECQANGH PRPTLYWSVE GNSSLLLPGY 

       430        440        450        460        470        480 
RDGRMEVTLT PEGRSVLSIA RFAREDSGKV VTCNALNAVG SVSSRTVVSV DTQFELPPPI 

       490        500        510        520        530        540 
IEQGPVNQTL PVKSIVVLPC RTLGTPVPQV SWYLDGIPID VQEHERRNLS DAGALTISDL 

       550        560        570        580        590        600 
QRHEDEGLYT CVASNRNGKS SWSGYLRLDT PTNPNIKFFR APELSTYPGP PGKPQMVEKG 

       610        620        630        640        650        660 
ENSVTLSWTR SNKVGGSSLV GYVIEMFGKN ETDGWVAVGT RVQNTTFTQT GLLPGVNYFF 

       670        680        690        700        710        720 
LIRAENSHGL SLPSPMSEPI TVGTRYFNSG LDLSEARASL LSGDVVELSN ASVVDSTSMK 

       730        740        750        760        770        780 
LTWQIINGKY VEGFYVYARQ LPNPIVNNPA PVTSNTNPLL GSTSTSASAS ASASALISTK 

       790        800        810        820        830        840 
PNIAAAGKRD GETNQSGGGA PTPLNTKYRM LTILNGGGAS SCTITGLVQY TLYEFFIVPF 

       850        860        870        880        890        900 
YKSVEGKPSN SRIARTLEDV PSEAPYGMEA LLLNSSAVFL KWKAPELKDR HGVLLNYHVI 

       910        920        930        940        950        960 
VRGIDTAHNF SRILTNVTID AASPTLVLAN LTEGVMYTVG VAAGNNAGVG PYCVPATLRL 

       970        980        990       1000       1010       1020 
DPITKRLDPF INQRYPINQD HVNDVLTQPW FIILLGAILA VLMLSFGAMV FVKRKHMMMK 

      1030       1040       1050       1060       1070       1080 
QSALNTMRGN HTSDVLKMPS LSARNGNGYW LDSSTGGMVW RPSPGGDSLE MQKDHIADYA 

      1090       1100       1110       1120       1130       1140 
PVCGAPGSPA GGGTSSGGSG GAGSGASGGD DIHGGHGSER NQQRYVGEYS NIPTDYAEVS 

      1150       1160       1170       1180       1190       1200 
SFGKAPSEYG RHGNASPAPY ATSSILSPHQ QQQQQQPRYQ QRPVPGYGLQ RPMHPHYQQQ 

      1210       1220       1230       1240       1250       1260 
QHQQQQAQQT HQQHQALQQH QQLPPSNIYQ QMSTTSEIYP TNTGPSRSVY SEQYYYPKDK 

      1270       1280       1290       1300       1310       1320 
QRHIHITENK LSNCHTYEAA PGAKQSSPIS SQFASVRRQQ LPPNCSIGRE SARFKVLNTD 

      1330       1340       1350       1360       1370       1380 
QGKNQQNLLD LDGSSMCYNG LADSGCGGSP SPMAMLMSHE DEHALYHTAD GDLDDMERLY 

      1390       1400       1410       1420       1430       1440 
VKVDEQQPPQ QQQQLIPLVP QHPAEGHLQS WRNQSTRSSR KNGQECIKEP SELIYAPGSV 

      1450       1460 
ASERSLLSNS GSGTSSQPAG HNV 

« Hide

References

« Hide 'large scale' references
[1]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[2]"Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence."
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A., Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A., George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R., Pacleb J.M., Park S. expand/collapse author list , Pfeiffer B.D., Richards S., Sodergren E.J., Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C., Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[3]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: Berkeley.
[4]"The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[5]"Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[6]"Combined evidence annotation of transposable elements in genome sequences."
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
PLoS Comput. Biol. 1:166-175(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[7]Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[8]"Drosophila melanogaster release 4 sequence."
Berkeley Drosophila Genome Project
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[9]"The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
Smith C.D., Shu S., Mungall C.J., Karpen G.H.
Science 316:1586-1591(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[10]"Sequence finishing and mapping of Drosophila melanogaster heterochromatin."
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M., Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A., Dimitri P., Karpen G.H., Celniker S.E.
Science 316:1625-1628(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[11]FlyBase
Submitted (DEC-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[12]Carlson J., Booth B., Frise E., Park S., Wan K., Yu C., Celniker S.
Submitted (NOV-2013) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE014134 Genomic DNA. Translation: AAF51375.2.
BT150394 mRNA. Translation: AHA59284.1.
RefSeqNP_536792.2. NM_080531.3.
UniGeneDm.1441.

3D structure databases

ProteinModelPortalQ9VQ08.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

MINTMINT-788772.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0077941; FBpp0077606; FBgn0002543.
GeneID44522.
KEGGdme:Dmel_CG5481.
UCSCCG5481-RA. d. melanogaster.

Organism-specific databases

CTD44522.
FlyBaseFBgn0002543. lea.

Phylogenomic databases

GeneTreeENSGT00720000108572.
InParanoidQ9VQ08.

Gene expression databases

BgeeQ9VQ08.

Family and domain databases

Gene3D2.60.40.10. 9 hits.
InterProIPR003961. Fibronectin_type3.
IPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR013098. Ig_I-set.
IPR003599. Ig_sub.
IPR003598. Ig_sub2.
[Graphical view]
PfamPF00041. fn3. 2 hits.
PF07679. I-set. 4 hits.
[Graphical view]
SMARTSM00060. FN3. 3 hits.
SM00409. IG. 1 hit.
SM00408. IGc2. 4 hits.
[Graphical view]
SUPFAMSSF49265. SSF49265. 3 hits.
PROSITEPS50853. FN3. 3 hits.
PS50835. IG_LIKE. 5 hits.
[Graphical view]
ProtoNetSearch...

Other

GenomeRNAi44522.
NextBio837362.

Entry information

Entry nameQ9VQ08_DROME
AccessionPrimary (citable) accession number: Q9VQ08
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: October 1, 2002
Last modified: April 16, 2014
This is version 116 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)