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Q9VMS4

- Q9VMS4_DROME

UniProt

Q9VMS4 - Q9VMS4_DROME

Protein
Submitted name:

GH23983p

Gene

vri

Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 114 (01 Oct 2014)
      Sequence version 1 (01 May 2000)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. protein heterodimerization activity Source: FlyBase
    2. protein homodimerization activity Source: FlyBase
    3. RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription Source: FlyBase
    4. sequence-specific DNA binding Source: InterPro

    GO - Biological processi

    1. cellular process Source: FlyBase
    2. chaeta morphogenesis Source: FlyBase
    3. circadian rhythm Source: FlyBase
    4. imaginal disc-derived wing hair organization Source: FlyBase
    5. locomotor rhythm Source: FlyBase
    6. multicellular organismal aging Source: FlyBase
    7. multicellular organismal development Source: FlyBase
    8. negative regulation of transcription from RNA polymerase II promoter Source: GOC
    9. open tracheal system development Source: FlyBase
    10. positive regulation of heart contraction Source: FlyBase
    11. rhythmic behavior Source: FlyBase
    12. transcription, DNA-templated Source: FlyBase

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    GH23983pImported
    Submitted name:
    Vrille, isoform AImported
    Submitted name:
    Vrille, isoform DImported
    Submitted name:
    Vrille, isoform FImported
    Gene namesi
    Name:vriImported
    ORF Names:CG14029Imported, Dmel_CG14029Imported
    OrganismiDrosophila melanogaster (Fruit fly)Imported
    Taxonomic identifieri7227 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
    ProteomesiUP000000803: Chromosome 2L

    Organism-specific databases

    FlyBaseiFBgn0016076. vri.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: FlyBase

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00530000064087.
    InParanoidiQ9VMS4.
    KOiK12114.
    OMAiHIKQEPN.

    Family and domain databases

    InterProiIPR004827. bZIP.
    [Graphical view]
    PfamiPF07716. bZIP_2. 1 hit.
    [Graphical view]
    SMARTiSM00338. BRLZ. 1 hit.
    [Graphical view]
    PROSITEiPS50217. BZIP. 1 hit.
    PS00036. BZIP_BASIC. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9VMS4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSIVCTLEQK VNFFKAAATT KNLLILKNNT DTNYINNYKQ DNPSNNKFPR    50
    IQAQSNNSHL QHQQQLQQKL AQLHHYSQQK LSGSDFPYGP RPPTGGKEEK 100
    LLLLAPPGKL YPEASVSTAM PEVLSGTPTN SHNKANIAMM NNVRLSNISP 150
    TLSMNGSSNE ASNLHPLSMY GGSISPQSND SGMSDSLGKY VPGSGYGDGM 200
    MAQSPSQGGN GPQSALTAAQ KELFSQRKQR EFTPDNKKDE SYWDRRRRNN 250
    EAAKRSREKR RYNDMVLEQR VIELTKENHV LKAQLDAIRD KFNISGENLV 300
    SVEKILASLP TSEQVLSNTK RAKMSGSGGS SSGSSPSGSG SGEGSPQGGH 350
    NGYPVGPPLS PLIYGPNGNA RPEATVKSVH HIHHAGVAPP PTHLQQLVVP 400
    QSQTQHLYQP QPQQHQPHQQ QQISQPPQQQ QQQQEPSPSA GSSSPVISDP 450
    HNRPPSTTIA NLQVQLQQAL NRNVRPEDLD SLRKVVAAGA LYNAAAVVGA 500
    PPPPPSAGLY VPAPSAYKDH LEAAAAWSHN VEAAVSSSAV DAVSSSSVSG 550
    SAASVLNLSR RACSPSYEHM LSSTTSSTLS SASSSGAVSG DDEQEHEPAH 600
    MAPLQLQRSS PQQGSDANNC LPLKLRHKSH LGDKDAAATA LLSLQHIKQE 650
    PNCSRASPPA WNDGGDNSSD ERDSGISIAS AEWTAQLQRK LLAPKEANVV 700
    TSAERDQMLK SQLERLESEV ASIKMILAE 729
    Length:729
    Mass (Da):78,296
    Last modified:May 1, 2000 - v1
    Checksum:i02B206B630220B5E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE014134 Genomic DNA. Translation: AAF52237.1.
    BT031200 mRNA. Translation: ABY20441.1.
    AE014134 Genomic DNA. Translation: ACL82998.1.
    AE014134 Genomic DNA. Translation: AHN54139.1.
    RefSeqiNP_001137792.1. NM_001144320.1.
    NP_477191.1. NM_057843.3.
    UniGeneiDm.3340.

    Genome annotation databases

    EnsemblMetazoaiFBtr0079071; FBpp0078706; FBgn0016076.
    FBtr0300020; FBpp0289297; FBgn0016076.
    GeneIDi33759.
    KEGGidme:Dmel_CG14029.
    UCSCiCG14029-RA. d. melanogaster.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE014134 Genomic DNA. Translation: AAF52237.1 .
    BT031200 mRNA. Translation: ABY20441.1 .
    AE014134 Genomic DNA. Translation: ACL82998.1 .
    AE014134 Genomic DNA. Translation: AHN54139.1 .
    RefSeqi NP_001137792.1. NM_001144320.1.
    NP_477191.1. NM_057843.3.
    UniGenei Dm.3340.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblMetazoai FBtr0079071 ; FBpp0078706 ; FBgn0016076 .
    FBtr0300020 ; FBpp0289297 ; FBgn0016076 .
    GeneIDi 33759.
    KEGGi dme:Dmel_CG14029.
    UCSCi CG14029-RA. d. melanogaster.

    Organism-specific databases

    CTDi 33759.
    FlyBasei FBgn0016076. vri.

    Phylogenomic databases

    GeneTreei ENSGT00530000064087.
    InParanoidi Q9VMS4.
    KOi K12114.
    OMAi HIKQEPN.

    Miscellaneous databases

    GenomeRNAii 33759.
    NextBioi 785117.

    Family and domain databases

    InterProi IPR004827. bZIP.
    [Graphical view ]
    Pfami PF07716. bZIP_2. 1 hit.
    [Graphical view ]
    SMARTi SM00338. BRLZ. 1 hit.
    [Graphical view ]
    PROSITEi PS50217. BZIP. 1 hit.
    PS00036. BZIP_BASIC. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of Drosophila melanogaster."
      Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D.
      , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
      Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    3. Cited for: GENOME REANNOTATION.
      Strain: BerkeleyImported.
    4. "The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
      Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
      Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    5. "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
      Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
      Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    6. "Combined evidence annotation of transposable elements in genome sequences."
      Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
      PLoS Comput. Biol. 1:166-175(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    7. Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
      Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    8. "Drosophila melanogaster release 4 sequence."
      Berkeley Drosophila Genome Project
      Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
      Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    9. "The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
      Smith C.D., Shu S., Mungall C.J., Karpen G.H.
      Science 316:1586-1591(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    10. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    11. Stapleton M., Carlson J., Frise E., Kapadia B., Park S., Wan K., Yu C., Celniker S.
      Submitted (DEC-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BerkeleyImported.
    12. FlyBase
      Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.

    Entry informationi

    Entry nameiQ9VMS4_DROME
    AccessioniPrimary (citable) accession number: Q9VMS4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 1, 2000
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 114 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3