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Q9VK44 (Q9VK44_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 85. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

CG9934, isoform B EMBL ACZ94253.1

LD24832p EMBL AAM11156.1
Gene names
ORF Names:CG9934 EMBL AAM11156.1 FlyBase FBgn0032467, Dmel_CG9934 EMBL AAF53238.1
OrganismDrosophila melanogaster (Fruit fly)
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryotaMetazoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora

Protein attributes

Sequence length1217 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Sequences

Sequence LengthMass (Da)Tools
Q9VK44 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 63A242814B855B40

FASTA1,217138,592
        10         20         30         40         50         60 
MPEEEPPQKP MEEEEDDDQE QDQDQDHEQD QHEQDQQPQL AQGEIPGQQL PEQPNPDVQP 

        70         80         90        100        110        120 
QQPAESVVVT ELSAEEMRAR RLRTLAARSG IQCALAPLTT TPRKPTNVSG ESRLVREATP 

       130        140        150        160        170        180 
GEKEVSLPTS APAWRELSGK PDMDVEMKSV VSTPMQDVDM TTALSLPTAE ATKRSVLQSC 

       190        200        210        220        230        240 
KISAGNAELS IETVVGPKKS ADEQNEQLLS RLLNATWNEY GSGSIICAQS ASFLEQQPHR 

       250        260        270        280        290        300 
RFDFECIVAN VLMEAVLKIY NGELIEGDGV SVKADDKEFS SAKKIKSDDT EVQEILANAV 

       310        320        330        340        350        360 
ATGGATASGE TAAAAAGASG PIEATSSEAA GTCVAPPVLS IVATTKHHVL LYLIRCYQNY 

       370        380        390        400        410        420 
QTECSRKTPL TQPALQLAFE QVMRMTVLVL TDRIYQNLNG HMDQSALLDL MYMAKVSEPF 

       430        440        450        460        470        480 
LIDLIAHTHQ DREAFDTIFS QVLRGLFAGM QRNICTSKIS VQQIEWLSKL VVIKVGSVRP 

       490        500        510        520        530        540 
IADLVSRQPN FLPPICTKIS GREIVKCSFL GPFLSVSLFA EENIKFAEFT TKNKLEDASS 

       550        560        570        580        590        600 
SRLRWELHSM RTNMHVVFHS LCVNASSRPK TLEYIASILR HNDRRVQFAS DEKLLARDGF 

       610        620        630        640        650        660 
MINLMSVLQQ LSVKIKLDRI EPNFHYYKNS LVNIEQDTKI RYSEEEYRNF LARDFSQPVE 

       670        680        690        700        710        720 
NTNFQTQCWF LTLQAHHLGY LPAIQRYRQK VRAIKELQKL IDELDRTKSH WMNSRYANRN 

       730        740        750        760        770        780 
NQFKERWEKQ LRKLNRSKTC CEITLLDPGL LQRCTEFYST VCEFMLYQFE GRPIEGPFIS 

       790        800        810        820        830        840 
KLPVQQLLPT DAFSALPEWY IDDIAEFILF TMQHANMDIR QGIDHSIITW LLTCVCASHL 

       850        860        870        880        890        900 
IKNPYVTAKL VEVMFVFSLK PANSVNAAMW NHELAQNALV SSLMRFYVDV ETTGQSTEFY 

       910        920        930        940        950        960 
DKFTIRYHIS HLFKSMWENP IHRQAVICES RVGNQFVKFV NMLMNDTTFL LDECLENLKR 

       970        980        990       1000       1010       1020 
IHQTQQLLSD KANLSKMSAE QQQSRLTQLA TDERQCRSYL TLARETVDLF HYLTSDIKEP 

      1030       1040       1050       1060       1070       1080 
FMRDELVDRL SSMLNFNLKQ LAGPKCNDLK VKNPAKYGWE PRSLLAQIFD IYLHLDCDRF 

      1090       1100       1110       1120       1130       1140 
AEALAADERS FDVQICNEAA SRIKRLALRS AVEVERFKAL TQRAHEIYVT NLQTEDECAD 

      1150       1160       1170       1180       1190       1200 
APDEFKDPLM DTLMSDPVVL PSGTVMDRAI ITRHLLNSCT DPFNRQPLTE DMLVANIELK 

      1210 
QRIDAWRKEQ RGKRNNC 

« Hide

References

« Hide 'large scale' references
[1]"The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
Smith C.D., Shu S., Mungall C.J., Karpen G.H.
Science 316:1586-1591(2007) [PubMed: 17569856] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Sequence finishing and mapping of Drosophila melanogaster heterochromatin."
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M., Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A., Dimitri P., Karpen G.H., Celniker S.E.
Science 316:1625-1628(2007) [PubMed: 17569867] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[3]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[4]"Combined evidence annotation of transposable elements in genome sequences."
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
PLoS Comput. Biol. 1:166-175(2005) [PubMed: 16110336] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley.
[6]"Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
Genome Biol. 3:RESEARCH0085.1-RESEARCH0085.16(2002) [PubMed: 12537574] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[7]"The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J.W., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) [PubMed: 12537573] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[8]"Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence."
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A., Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A., George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R., Pacleb J.M., Park S. expand/collapse author list , Pfeiffer B.D., Richards S., Sodergren E.J., Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C., Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.
Genome Biol. 3 (12), RESEARCH0079 (2002)
Cited for: NUCLEOTIDE SEQUENCE.
[9]Drosophila Heterochromatin Genome Project
Smith C.D., Shu S., Mungall C.J., Karpen G.H.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[10]FlyBase
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[11]Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J., Champe M., Chavez C., Dorsett V., Dresnek D., Farfan D., Frise E., George R., Gonzalez M., Guarin H., Kronmiller B., Li P., Liao G., Miranda A. expand/collapse author list , Mungall C.J., Nunoo J., Pacleb J., Paragas V., Park S., Patel S., Phouanenavong S., Wan K., Yu C., Lewis S.E., Rubin G.M., Celniker S.
Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley EMBL AAM11156.1.
[12]Celniker S., Carlson J., Kennedy C., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Karpen G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[13]Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[14]"Drosophila melanogaster release 4 sequence."
Berkeley Drosophila Genome Project
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE014134 Genomic DNA. Translation: AAF53238.1.
AY094803 mRNA. Translation: AAM11156.1.
AE014134 Genomic DNA. Translation: ACZ94253.1.
RefSeqNP_001162967.1. NM_001169496.1.
NP_609597.1. NM_135753.3.
UniGeneDm.6565.

3D structure databases

ProteinModelPortalQ9VK44.
SMRQ9VK44. Positions 347-1213.
ModBaseSearch...

Protein-protein interaction databases

IntActQ9VK44. 1 interaction.
MINTMINT-1676904.

Proteomic databases

PRIDEQ9VK44.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0080428; FBpp0080009; FBgn0032467.
FBtr0301247; FBpp0290465; FBgn0032467.
GeneID34699.
KEGGdme:Dmel_CG9934.
NMPDRfig|7227.3.peg.2202.
UCSCCG9934-RA. d. melanogaster.

Organism-specific databases

FlyBaseFBgn0032467. CG9934.

Phylogenomic databases

GeneTreeEMGT00050000011333.
InParanoidQ9VK44.
OMAKEFSSAK.
PhylomeDBQ9VK44.

Gene expression databases

ArrayExpressQ9VK44.
BgeeQ9VK44.

Family and domain databases

InterProIPR019474. Ub_conjug_fac_E4_core.
IPR003613. Ubox_domain.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
Gene3DG3DSA:3.30.40.10. Znf_RING/FYVE/PHD. 1 hit.
KOK10597.
PfamPF04564. U-box. 1 hit.
PF10408. Ufd2P_core. 1 hit.
[Graphical view]
SMARTSM00504. Ubox. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio789760.

Entry information

Entry nameQ9VK44_DROME
AccessionPrimary (citable) accession number: Q9VK44
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: January 25, 2012
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)