Unreviewed, UniProtKB/TrEMBL Q9VHB7 (Q9VHB7_DROME)

Names and origin

Protein names

Submitted name:
    MBD-like, isoform A EMBL AAF54400.2
Submitted name:
    LD22928p EMBL AAN71240.1

Gene names

Name:	MBD-like EMBL AAF54400.2 FlyBase FBgn0027950
ORF Names:	CG8208 FlyBase FBgn0027950, Dmel_CG8208 EMBL AAF54400.2

Organism

Drosophila melanogaster (Fruit fly)

Taxonomic identifier

7227 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora

Protein attributes

Sequence length	339 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

Ontologies

Gene Ontology (GO)
Biological process	multicellular organismal development Traceable author statement. Source: FlyBase negative regulation of transcription, DNA-dependent Inferred from direct assay. Source: FlyBase
Cellular component	NuRD complex Inferred from physical interaction. Source: FlyBase polytene chromosome Inferred from direct assay. Source: FlyBase
Molecular function	histone deacetylase binding Inferred from physical interaction. Source: FlyBase methyl-CpG binding Inferred from direct assay. Source: FlyBase transcription regulator activity Inferred from direct assay. Source: FlyBase
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9VHB7-1 [UniParc]. Last modified October 1, 2002. Version 2. Checksum: B745DA7EE88D0A85	FASTA	339	36,275
	10 20 30 40 50 60 MQMNPSVTIE RKRVDCSVLP KGWQRDEVRK SGSSANNNAS SNNNSSATAS SNNNNNKVDV 70 80 90 100 110 120 FYYSPTGKRA EGKPQDIAIP DFQPGKMPHC ALPSPSISLY RCSAMPLPIA SGGGNGATSG 130 140 150 160 170 180 SAANALKRKF ARSQGGNAAG AAGAAPPAAT ASSAATATAA SASPSTANRQ QQQIELSRAL 190 200 210 220 230 240 RTDVSLVPPI RQTASIFKQP VTVIRNHKQD PAKAKNEPKH GTREKPKQLF WEKRLERLRA 250 260 270 280 290 300 CHDSGEELDD ISLPKTIRTV GPNVNEQTVL QSVATALHML NAGVHGQSST KADLTKNAMA 310 320 330 FMNPEQPLMH AVIISEDDIR KQEDRVGVAR RKLQDALKT

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome sequence of Drosophila melanogaster." Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C. Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Berkeley.
[2]	"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review." Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E. Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Berkeley.
[3]	Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J., Champe M., Chavez C., Dorsett V., Dresnek D., Farfan D., Frise E., George R., Gonzalez M., Guarin H., Kronmiller B., Li P., Liao G., Miranda A. , Mungall C.J., Nunoo J., Pacleb J., Paragas V., Park S., Patel S., Phouanenavong S., Wan K., Yu C., Lewis S.E., Rubin G.M., Celniker S. Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Berkeley EMBL AAN71240.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AE014297 Genomic DNA. Translation: AAF54400.2. BT001485 mRNA. Translation: AAN71240.1.
RefSeq	NP_731370.1.
UniGene	Dm.1126
3D structure databases
HSSP	HSSP built from PDB template 1IG4 based on UniProtKB Q9UNZ9.
ModBase	Search...
Genome annotation databases
Ensembl	FBgn0027950. Drosophila melanogaster. [Contig view]
GeneID	41151.
NMPDR	fig|7227.3.peg.11906.
Organism-specific databases
FlyBase	FBgn0027950. MBD-like.
Phylogenomic databases
HOGENOM	Q9VHB7.
OMA	Q9VHB7. MHAVIIS.
Gene expression databases
ArrayExpress	Q9VHB7.
Family and domain databases
InterPro	IPR001739. Methyl_CpG_DNA-bd. [Graphical view]
Gene3D	G3DSA:3.30.890.10. Methyl_CpG_DNA-bd. 1 hit.
Pfam	PF01429. MBD. 2 hits. [Graphical view]
PROSITE	PS50982. MBD. 1 hit. [Graphical view]
ProtoNet	Search...
Other Resources
NextBio	822427.

Entry information

Entry name

Q9VHB7_DROME

Accession

Primary (citable) accession number: Q9VHB7

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	October 1, 2002
Last modified:	June 16, 2009
This is version 50 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)