Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q9VHA1 (Q9VHA1_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 82. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Spermidine synthase, isoform A EMBL AAF54417.1
EC=2.5.1.16 EMBL AAF54417.1
Gene names
Name:SpdS EMBL AAF54417.1
ORF Names:Dmel_CG8327 EMBL AAF54417.1
OrganismDrosophila melanogaster (Fruit fly)
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora

Protein attributes

Sequence length287 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the spermidine/spermine synthase family. RuleBase RU003836

Ontologies

Keywords
   Molecular functionTransferase RuleBase RU003836 EMBL AAF54417.1
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular functionspermidine synthase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q9VHA1 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 80EE950E91B193F9

FASTA28732,335
        10         20         30         40         50         60 
MDSLNNGWFS ELQADLWPGQ SFSLKVKEVI HKEKSRFQDI QIVETETYGR CLILDGIIQC 

        70         80         90        100        110        120 
TARDEFSYQE MISFLPLCAH PNPKKVLIVG GGDGGVAREV VKHPLVEEVH QVEIDDRVVE 

       130        140        150        160        170        180 
LSKQYLPAMA CGFANEKLKL TIGDGFDYMK KHKNEFDVII TDSSDPIGPA VSLFQESYYE 

       190        200        210        220        230        240 
LMKHALKDDG IVCSQGGSFW LDLDYIKKTM SGCKEHFAKV AYAVTSVPSY PCGHIGFVMG 

       250        260        270        280 
SLNKNQDFAT PKLGKSEIDS IDLRYYSSEV HSAAFALPRW VQKHFYE

« Hide

References

« Hide 'large scale' references
[1]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley.
[2]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE014297 Genomic DNA. Translation: AAF54417.1.
RefSeqNP_731384.1. NM_169298.2.
UniGeneDm.20162.

3D structure databases

HSSPHSSP built from PDB template 1INL based on UniProtKB Q9WZC2.
ProteinModelPortalQ9VHA1.
SMRQ9VHA1. Positions 3-287.
ModBaseSearch...

Protein-protein interaction databases

IntActQ9VHA1. 2 interactions.
MINTMINT-307300.
STRINGQ9VHA1.

Proteomic databases

PRIDEQ9VHA1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0082078; FBpp0081556; FBgn0037723.
FBtr0306007; FBpp0297149; FBgn0037723.
GeneID41167.
KEGGdme:Dmel_CG8327.
UCSCCG8327-RA. d. melanogaster.

Organism-specific databases

CTD41167.
FlyBaseFBgn0037723. SpdS.

Phylogenomic databases

InParanoidQ9VHA1.
OMAPCGHIGF.
PhylomeDBQ9VHA1.

Gene expression databases

ArrayExpressQ9VHA1.
BgeeQ9VHA1.

Family and domain databases

HAMAPMF_00198. Spermidine_synth.
[Tree]
InterProIPR001045. Sprmine_synthase.
[Graphical view]
KOK00797.
PANTHERPTHR11558. Sprmine_synthase. 1 hit.
PfamPF01564. Spermine_synth. 1 hit.
[Graphical view]
TIGRFAMsTIGR00417. SpeE. 1 hit.
PROSITEPS01330. SPERMIDINE_SYNTHASE_1. 1 hit.
PS51006. SPERMIDINE_SYNTHASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio822519.

Entry information

Entry nameQ9VHA1_DROME
AccessionPrimary (citable) accession number: Q9VHA1
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: January 25, 2012
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info