Q9VGZ6 (Q9VGZ6_DROME) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Rfx, isoform A EMBL AAF54526.2

Gene names

Name:	Rfx EMBL AAF54526.2
ORF Names:	Dmel_CG6312 EMBL AAF54526.2

Organism

Drosophila melanogaster (Fruit fly)

Taxonomic identifier

7227 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora

Protein attributes

Sequence length	897 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	dendrite morphogenesis Traceable author statement. Source: FlyBase regulation of transcription, DNA-dependent Traceable author statement. Source: FlyBase sensory perception of sound Inferred from mutant phenotype. Source: FlyBase
Molecular function	DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9VGZ6 [UniParc]. Last modified March 1, 2001. Version 2. Checksum: 55F2DF1F19BFF7AF	FASTA	897	98,026
	10 20 30 40 50 60 MTTRLAPQRQ FILSTRSAIV DATSPPEDSA EEQQQLTVEV ESATNGVITN STTSPPPHAE 70 80 90 100 110 120 QFEFCTEDGV VVSATLEDVM TQVKLFPLLQ NCQLLQKKLV DEDDDSTGVG ATDADQLEVI 130 140 150 160 170 180 SVVLPMDAED STSDAHLHGH VVNSSSDTMG TITTTEPNGT TVTHSIPIHS MADLAAIKDG 190 200 210 220 230 240 VDLAQQVANG QVTVVQTTED DDGTPFITVT VSGQEQNYQV QYVDSELYHS NSSQTQMTYP 250 260 270 280 290 300 FCPVGDYQGN GQTAYYSTTG QYGTTSSAGG SSNGAHSTTL PYLVPVEEGI LLNGSAHSLS 310 320 330 340 350 360 QSQSQSHGRD SPHSLTEVAY IQEAQSTPQT PTSTTTTHSA SGGSLGTGGG GASPDSDQSA 370 380 390 400 410 420 LGSSNKIASA TIKWLSRNYE TADGVSLPRS TLYNHYMQHC SEHKLEPVNA ASFGKLIRSV 430 440 450 460 470 480 FSGLRTRRLG TRGNSKYHYY GIRIKPGSLL NSQAMDDKQM LAAGYGPSSD GTGGPGSGPM 490 500 510 520 530 540 VSVTSSTAGQ LTGSNGLGGG HGQRHSNGTK KHTFKPETYE ACIQYIGDGT SALPSFPPIE 550 560 570 580 590 600 LNHSFNSELT LEDVDTFRGL YREHCESFLD AVLNLEFNTV EFLLRDFWRA SDNNNLDECE 610 620 630 640 650 660 EEKYLSKTKL YLLCHCAEVQ KFVREVDYQF YQNTVDVIIP DVLRSIPNAL TQAIRNFAKN 670 680 690 700 710 720 LEIWLCESML GVPEQLAQIK TSAVSAFCQT LRRYTSLNHL AQAARAVLQN GAQISQMLSD 730 740 750 760 770 780 LNRVDFHNVQ EQAAWVSQCA PAVVQRLESD FKAALQQQSS LEQWASWLQL VVESAMEEYN 790 800 810 820 830 840 GKPTYARAAR QFLLKWSFYS SMIIRDLTLR SASSFGSFHL IRLLFDEYMF YLVEHKIAEA 850 860 870 880 890 QDKTAIAVIC ERMKKDMDFE FECQFAYITS DTEHQTTPSS ASSGGDVGNE AKRLKQE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review." Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E. Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Berkeley.
[2]	"The genome sequence of Drosophila melanogaster." Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C. Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Berkeley.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE014297 Genomic DNA. Translation: AAF54526.2.
RefSeq	NP_649999.2. NM_141742.2.
UniGene	Dm.3010.
3D structure databases
HSSP	HSSP built from PDB template 1DP7 based on UniProtKB P22670.
ProteinModelPortal	Q9VGZ6.
SMR	Q9VGZ6. Positions 371-445.
ModBase	Search...
Protein-protein interaction databases
STRING	Q9VGZ6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblMetazoa	FBtr0082238; FBpp0081716; FBgn0020379.
GeneID	41266.
KEGG	dme:Dmel_CG6312.
NMPDR	fig|7227.3.peg.12069.
UCSC	CG6312-RA. d. melanogaster.
Organism-specific databases
CTD	41266.
FlyBase	FBgn0020379. Rfx.
Phylogenomic databases
GeneTree	EMGT00050000000456.
InParanoid	Q9VGZ6.
OMA	FEFCTED.
PhylomeDB	Q9VGZ6.
Gene expression databases
ArrayExpress	Q9VGZ6.
Bgee	Q9VGZ6.
Family and domain databases
InterPro	IPR003150. RFX_DNA-bd. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 1 hit.
KO	K09173.
Pfam	PF02257. RFX_DNA_binding. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	823000.

Entry information

Entry name

Q9VGZ6_DROME

Accession

Primary (citable) accession number: Q9VGZ6

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	March 1, 2001
Last modified:	January 25, 2012
This is version 82 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)