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Q9VFT3

- Q9VFT3_DROME

UniProt

Q9VFT3 - Q9VFT3_DROME

Protein
Submitted name:

RNA-binding protein 4

Gene

Rbp4

Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 108 (01 Oct 2014)
      Sequence version 1 (01 May 2000)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. mRNA binding Source: FlyBase
    2. nucleotide binding Source: InterPro
    3. single-stranded RNA binding Source: FlyBase

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    RNA-binding protein 4Imported
    Gene namesi
    Name:Rbp4Imported
    ORF Names:CG9654Imported, Dmel_CG9654Imported
    OrganismiDrosophila melanogaster (Fruit fly)Imported
    Taxonomic identifieri7227 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
    ProteomesiUP000000803: Chromosome 3R

    Organism-specific databases

    FlyBaseiFBgn0010258. Rbp4.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: FlyBase

    PTM / Processingi

    Proteomic databases

    PRIDEiQ9VFT3.

    Expressioni

    Gene expression databases

    BgeeiQ9VFT3.

    Interactioni

    Protein-protein interaction databases

    IntActiQ9VFT3. 2 interactions.
    MINTiMINT-293305.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9VFT3.
    SMRiQ9VFT3. Positions 29-216.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00730000110584.
    InParanoidiQ9VFT3.
    OMAiNCASSAC.
    PhylomeDBiQ9VFT3.

    Family and domain databases

    Gene3Di3.30.70.330. 2 hits.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view]
    PfamiPF00076. RRM_1. 2 hits.
    [Graphical view]
    SMARTiSM00360. RRM. 2 hits.
    [Graphical view]
    PROSITEiPS50102. RRM. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9VFT3-1 [UniParc]FASTAAdd to Basket

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    MDAGNCASSA CLGDCKGDGK TAIKEEGYEH LRKIFIGGLS TQTTVETLRG    50
    FFSQFGIVAD AVVLRDPVSN HSRGFGFVTY VDPKSVEIVQ RARPHTIDNK 100
    IVETKHALPR QDFKRGGGVG SVVGSFGCEA GFMNSKRIFL GGLKEYHDEN 150
    IVREYFSQFG PVASVKLLMD RETGRQRAFG FLEFVDPSSA EKALAPRKHW 200
    ILQTLVEVKR STQKADRRFR FPIFSSVRAG YIPPQPATAD SYNYNNPNYN 250
    PYLAQSVLPP SAFTNGWAHY VIPMAPKPTP GQNMAASLPS QQLAEHSLNG 300
    HGPDMWSSYP KTGIYSAQEW TSSKVAEWGP KAGHKHAQTS TNDRAKIDLK 350
    ELQAATFNNK LDFGARGDAD RMSGAGLGLG LTGGAAVGVG AIKKWPTQDY 400
    KVFKPAKSPT NGVIPKIGKE ATTPPYGI 428
    Length:428
    Mass (Da):46,603
    Last modified:May 1, 2000 - v1
    Checksum:iD4124546FD6B8814
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE014297 Genomic DNA. Translation: AAF54966.1.
    RefSeqiNP_476935.1. NM_057587.4.
    UniGeneiDm.4811.

    Genome annotation databases

    EnsemblMetazoaiFBtr0082853; FBpp0082318; FBgn0010258.
    GeneIDi41668.
    KEGGidme:Dmel_CG9654.
    UCSCiCG9654-RA. d. melanogaster.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE014297 Genomic DNA. Translation: AAF54966.1 .
    RefSeqi NP_476935.1. NM_057587.4.
    UniGenei Dm.4811.

    3D structure databases

    ProteinModelPortali Q9VFT3.
    SMRi Q9VFT3. Positions 29-216.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi Q9VFT3. 2 interactions.
    MINTi MINT-293305.

    Proteomic databases

    PRIDEi Q9VFT3.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblMetazoai FBtr0082853 ; FBpp0082318 ; FBgn0010258 .
    GeneIDi 41668.
    KEGGi dme:Dmel_CG9654.
    UCSCi CG9654-RA. d. melanogaster.

    Organism-specific databases

    CTDi 5950.
    FlyBasei FBgn0010258. Rbp4.

    Phylogenomic databases

    GeneTreei ENSGT00730000110584.
    InParanoidi Q9VFT3.
    OMAi NCASSAC.
    PhylomeDBi Q9VFT3.

    Miscellaneous databases

    GenomeRNAii 41668.
    NextBioi 824937.

    Gene expression databases

    Bgeei Q9VFT3.

    Family and domain databases

    Gene3Di 3.30.70.330. 2 hits.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view ]
    Pfami PF00076. RRM_1. 2 hits.
    [Graphical view ]
    SMARTi SM00360. RRM. 2 hits.
    [Graphical view ]
    PROSITEi PS50102. RRM. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of Drosophila melanogaster."
      Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D.
      , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
      Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    3. Cited for: GENOME REANNOTATION.
      Strain: BerkeleyImported.
    4. "The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
      Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
      Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    5. "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
      Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
      Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    6. "Combined evidence annotation of transposable elements in genome sequences."
      Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
      PLoS Comput. Biol. 1:166-175(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    7. "The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
      Smith C.D., Shu S., Mungall C.J., Karpen G.H.
      Science 316:1586-1591(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    8. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.

    Entry informationi

    Entry nameiQ9VFT3_DROME
    AccessioniPrimary (citable) accession number: Q9VFT3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 1, 2000
    Last sequence update: May 1, 2000
    Last modified: October 1, 2014
    This is version 108 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3