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Q9VFT3

- Q9VFT3_DROME

UniProt

Q9VFT3 - Q9VFT3_DROME

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Protein
Submitted name: RNA-binding protein 4
Gene
Rbp4, CG9654, Dmel_CG9654
Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. mRNA binding Source: FlyBase
  2. nucleotide binding Source: InterPro
  3. single-stranded RNA binding Source: FlyBase
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
RNA-binding protein 4Imported
Gene namesi
Name:Rbp4Imported
ORF Names:CG9654Imported, Dmel_CG9654Imported
OrganismiDrosophila melanogaster (Fruit fly)Imported
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
ProteomesiUP000000803: Chromosome 3R

Organism-specific databases

FlyBaseiFBgn0010258. Rbp4.

Subcellular locationi

GO - Cellular componenti

  1. cytoplasm Source: FlyBase
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiQ9VFT3.

Expressioni

Gene expression databases

BgeeiQ9VFT3.

Interactioni

Protein-protein interaction databases

IntActiQ9VFT3. 2 interactions.
MINTiMINT-293305.

Structurei

3D structure databases

ProteinModelPortaliQ9VFT3.
SMRiQ9VFT3. Positions 29-216.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00730000110584.
InParanoidiQ9VFT3.
OMAiNCASSAC.
PhylomeDBiQ9VFT3.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00360. RRM. 2 hits.
[Graphical view]
PROSITEiPS50102. RRM. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9VFT3-1 [UniParc]FASTAAdd to Basket

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MDAGNCASSA CLGDCKGDGK TAIKEEGYEH LRKIFIGGLS TQTTVETLRG    50
FFSQFGIVAD AVVLRDPVSN HSRGFGFVTY VDPKSVEIVQ RARPHTIDNK 100
IVETKHALPR QDFKRGGGVG SVVGSFGCEA GFMNSKRIFL GGLKEYHDEN 150
IVREYFSQFG PVASVKLLMD RETGRQRAFG FLEFVDPSSA EKALAPRKHW 200
ILQTLVEVKR STQKADRRFR FPIFSSVRAG YIPPQPATAD SYNYNNPNYN 250
PYLAQSVLPP SAFTNGWAHY VIPMAPKPTP GQNMAASLPS QQLAEHSLNG 300
HGPDMWSSYP KTGIYSAQEW TSSKVAEWGP KAGHKHAQTS TNDRAKIDLK 350
ELQAATFNNK LDFGARGDAD RMSGAGLGLG LTGGAAVGVG AIKKWPTQDY 400
KVFKPAKSPT NGVIPKIGKE ATTPPYGI 428
Length:428
Mass (Da):46,603
Last modified:May 1, 2000 - v1
Checksum:iD4124546FD6B8814
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE014297 Genomic DNA. Translation: AAF54966.1.
RefSeqiNP_476935.1. NM_057587.4.
UniGeneiDm.4811.

Genome annotation databases

EnsemblMetazoaiFBtr0082853; FBpp0082318; FBgn0010258.
GeneIDi41668.
KEGGidme:Dmel_CG9654.
UCSCiCG9654-RA. d. melanogaster.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE014297 Genomic DNA. Translation: AAF54966.1 .
RefSeqi NP_476935.1. NM_057587.4.
UniGenei Dm.4811.

3D structure databases

ProteinModelPortali Q9VFT3.
SMRi Q9VFT3. Positions 29-216.
ModBasei Search...

Protein-protein interaction databases

IntActi Q9VFT3. 2 interactions.
MINTi MINT-293305.

Proteomic databases

PRIDEi Q9VFT3.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblMetazoai FBtr0082853 ; FBpp0082318 ; FBgn0010258 .
GeneIDi 41668.
KEGGi dme:Dmel_CG9654.
UCSCi CG9654-RA. d. melanogaster.

Organism-specific databases

CTDi 5950.
FlyBasei FBgn0010258. Rbp4.

Phylogenomic databases

GeneTreei ENSGT00730000110584.
InParanoidi Q9VFT3.
OMAi NCASSAC.
PhylomeDBi Q9VFT3.

Miscellaneous databases

GenomeRNAii 41668.
NextBioi 824937.

Gene expression databases

Bgeei Q9VFT3.

Family and domain databases

Gene3Di 3.30.70.330. 2 hits.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view ]
Pfami PF00076. RRM_1. 2 hits.
[Graphical view ]
SMARTi SM00360. RRM. 2 hits.
[Graphical view ]
PROSITEi PS50102. RRM. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The genome sequence of Drosophila melanogaster."
    Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D.
    , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
    Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  3. Cited for: GENOME REANNOTATION.
    Strain: Berkeley.
  4. "The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
    Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
    Genome Biol. 3:RESEARCH0084-RESEARCH0084(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  5. "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
    Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
    Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  6. "Combined evidence annotation of transposable elements in genome sequences."
    Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
    PLoS Comput. Biol. 1:166-175(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  7. "The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
    Smith C.D., Shu S., Mungall C.J., Karpen G.H.
    Science 316:1586-1591(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  8. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.

Entry informationi

Entry nameiQ9VFT3_DROME
AccessioniPrimary (citable) accession number: Q9VFT3
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: June 11, 2014
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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