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Protein
Submitted name:

RE17477p

Gene

smp-30

Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • calcium ion binding Source: FlyBase

GO - Biological processi

  • cold acclimation Source: FlyBase
  • negative regulation of imaginal disc-derived wing size Source: FlyBase
  • regulation of cell proliferation involved in imaginal disc-derived wing morphogenesis Source: FlyBase
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
RE17477pImported
Submitted name:
Senescence marker protein-30, isoform AImported
Submitted name:
Senescence marker protein-30, isoform BImported
Submitted name:
Senescence marker protein-30, isoform DImported
Submitted name:
Smp-30 proteinImported
Gene namesi
Name:smp-30Imported
Synonyms:Smp-30Imported
ORF Names:CG7390Imported, Dmel_CG7390Imported
OrganismiDrosophila melanogaster (Fruit fly)Imported
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome 3R

Organism-specific databases

FlyBaseiFBgn0038257. smp-30.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi7227.FBpp0082476.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini15 – 274260SGLInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG4499. Eukaryota.
COG3386. LUCA.
GeneTreeiENSGT00390000014995.
OMAiPENGRHD.

Family and domain databases

Gene3Di2.120.10.30. 1 hit.
InterProiIPR011042. 6-blade_b-propeller_TolB-like.
IPR013658. SGL.
IPR005511. SMP-30.
[Graphical view]
PfamiPF08450. SGL. 1 hit.
[Graphical view]
PRINTSiPR01790. SMP30FAMILY.

Sequencei

Sequence statusi: Complete.

Q9VFG5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYKVEAVPD SYAALGEGPH WDVDRQSLYY VDLESAGINR YDFKQNKVYR
60 70 80 90 100
AKIEGEIFAS FILPVENKPQ EFAVGCGLRT VIVQWDGVSA VAKVTRTLFE
110 120 130 140 150
VQPDLKENRL NDAKTDPNGR FYGGTMADSG DIFTQWKGEL YSWQAGGQPN
160 170 180 190 200
AIRSKVGISN GLAWDVKAKK FYFIDTNNHE VLAYDYNQST GAVSNPKVIF
210 220 230 240 250
DLRKIRPEGP LFPDGMTVDT DGNIYVATFN GGTVFKVNPS TGKILLEIKI
260 270 280 290 300
PTTQITSVAF GGPNLDILYV TTANKFDQPK PAGTTFQVTG LNAKGYAGVN

LKI
Length:303
Mass (Da):33,377
Last modified:May 1, 2000 - v1
Checksum:i68F92692E1AC88AD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014297 Genomic DNA. Translation: AAF55095.1.
AY071130 mRNA. Translation: AAL48752.1.
AE014297 Genomic DNA. Translation: AAN13618.1.
HM034321 Genomic DNA. Translation: ADI77942.1.
HM034322 Genomic DNA. Translation: ADI77943.1.
HM034324 Genomic DNA. Translation: ADI77945.1.
HM034329 Genomic DNA. Translation: ADI77950.1.
HM034336 Genomic DNA. Translation: ADI77957.1.
HM034350 Genomic DNA. Translation: ADI77971.1.
HM034361 Genomic DNA. Translation: ADI77982.1.
HM034392 Genomic DNA. Translation: ADI78011.1.
HM034394 Genomic DNA. Translation: ADI78013.1.
HM034397 Genomic DNA. Translation: ADI78016.1.
HM034405 Genomic DNA. Translation: ADI78024.1.
HM034418 Genomic DNA. Translation: ADI78036.1.
HM034419 Genomic DNA. Translation: ADI78037.1.
HM034420 Genomic DNA. Translation: ADI78038.1.
HM034421 Genomic DNA. Translation: ADI78039.1.
HM034422 Genomic DNA. Translation: ADI78040.1.
HM034424 Genomic DNA. Translation: ADI78042.1.
HM034425 Genomic DNA. Translation: ADI78043.1.
HM034430 Genomic DNA. Translation: ADI78048.1.
HM034436 Genomic DNA. Translation: ADI78054.1.
HM034442 Genomic DNA. Translation: ADI78060.1.
AE014297 Genomic DNA. Translation: AGB95962.1.
RefSeqiNP_001262581.1. NM_001275652.1.
NP_524353.2. NM_079629.4.
NP_731942.1. NM_169602.2.
UniGeneiDm.2426.

Genome annotation databases

EnsemblMetazoaiFBtr0083016; FBpp0082475; FBgn0038257.
FBtr0083017; FBpp0082476; FBgn0038257.
FBtr0336878; FBpp0307826; FBgn0038257.
GeneIDi41786.
UCSCiCG7390-RA. d. melanogaster.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014297 Genomic DNA. Translation: AAF55095.1.
AY071130 mRNA. Translation: AAL48752.1.
AE014297 Genomic DNA. Translation: AAN13618.1.
HM034321 Genomic DNA. Translation: ADI77942.1.
HM034322 Genomic DNA. Translation: ADI77943.1.
HM034324 Genomic DNA. Translation: ADI77945.1.
HM034329 Genomic DNA. Translation: ADI77950.1.
HM034336 Genomic DNA. Translation: ADI77957.1.
HM034350 Genomic DNA. Translation: ADI77971.1.
HM034361 Genomic DNA. Translation: ADI77982.1.
HM034392 Genomic DNA. Translation: ADI78011.1.
HM034394 Genomic DNA. Translation: ADI78013.1.
HM034397 Genomic DNA. Translation: ADI78016.1.
HM034405 Genomic DNA. Translation: ADI78024.1.
HM034418 Genomic DNA. Translation: ADI78036.1.
HM034419 Genomic DNA. Translation: ADI78037.1.
HM034420 Genomic DNA. Translation: ADI78038.1.
HM034421 Genomic DNA. Translation: ADI78039.1.
HM034422 Genomic DNA. Translation: ADI78040.1.
HM034424 Genomic DNA. Translation: ADI78042.1.
HM034425 Genomic DNA. Translation: ADI78043.1.
HM034430 Genomic DNA. Translation: ADI78048.1.
HM034436 Genomic DNA. Translation: ADI78054.1.
HM034442 Genomic DNA. Translation: ADI78060.1.
AE014297 Genomic DNA. Translation: AGB95962.1.
RefSeqiNP_001262581.1. NM_001275652.1.
NP_524353.2. NM_079629.4.
NP_731942.1. NM_169602.2.
UniGeneiDm.2426.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7227.FBpp0082476.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiFBtr0083016; FBpp0082475; FBgn0038257.
FBtr0083017; FBpp0082476; FBgn0038257.
FBtr0336878; FBpp0307826; FBgn0038257.
GeneIDi41786.
UCSCiCG7390-RA. d. melanogaster.

Organism-specific databases

CTDi41786.
FlyBaseiFBgn0038257. smp-30.

Phylogenomic databases

eggNOGiKOG4499. Eukaryota.
COG3386. LUCA.
GeneTreeiENSGT00390000014995.
OMAiPENGRHD.

Miscellaneous databases

ChiTaRSirgn. fly.
GenomeRNAii41786.

Family and domain databases

Gene3Di2.120.10.30. 1 hit.
InterProiIPR011042. 6-blade_b-propeller_TolB-like.
IPR013658. SGL.
IPR005511. SMP-30.
[Graphical view]
PfamiPF08450. SGL. 1 hit.
[Graphical view]
PRINTSiPR01790. SMP30FAMILY.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The genome sequence of Drosophila melanogaster."
    Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D.
    , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
    Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BerkeleyImported.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BerkeleyImported.
  5. "The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
    Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
    Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  6. "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
    Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
    Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  7. "Combined evidence annotation of transposable elements in genome sequences."
    Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
    PLoS Comput. Biol. 1:166-175(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  8. "Drosophila melanogaster release 4 sequence."
    Berkeley Drosophila Genome Project
    Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  9. Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  10. "The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
    Smith C.D., Shu S., Mungall C.J., Karpen G.H.
    Science 316:1586-1591(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  11. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  12. "Genetic variation in senescence marker protein-30 is associated with natural variation in cold tolerance in Drosophila."
    Clowers K.J., Lyman R.F., Mackay T.F., Morgan T.J.
    Genet. Res. 92:103-113(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: RAL_142Imported, RAL_181Imported, RAL_272Imported, RAL_287Imported, RAL_320Imported, RAL_535Imported, RAL_584Imported, RAL_588Imported, RAL_627Imported, RAL_736Imported, RAL_75Imported, RAL_787Imported, RAL_788Imported, RAL_790Imported, RAL_794Imported, RAL_801Imported, RAL_805Imported, RAL_808Imported, RAL_836Imported, RAL_86Imported and RAL_907Imported.
  13. FlyBase
    Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ9VFG5_DROME
AccessioniPrimary (citable) accession number: Q9VFG5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: July 6, 2016
This is version 120 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.