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Protein

40S ribosomal protein S5b

Gene

RpS5b

Organism
Drosophila melanogaster (Fruit fly)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • neurogenesis Source: FlyBase
  • ribosomal small subunit assembly Source: GO_Central
  • translation Source: GO_Central
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-DME-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-DME-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-DME-6791226. Major pathway of rRNA processing in the nucleolus.
R-DME-72649. Translation initiation complex formation.
R-DME-72689. Formation of a pool of free 40S subunits.
R-DME-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-DME-72702. Ribosomal scanning and start codon recognition.
R-DME-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-DME-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-DME-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S5b
Gene namesi
Name:RpS5b
Synonyms:RpS5
ORF Names:CG7014
OrganismiDrosophila melanogaster (Fruit fly)
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome 3R

Organism-specific databases

FlyBaseiFBgn0038277. RpS5b.

Subcellular locationi

GO - Cellular componenti

  • cytosolic small ribosomal subunit Source: GO_Central
  • microtubule associated complex Source: FlyBase
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 23023040S ribosomal protein S5bPRO_0000124531Add
BLAST

Proteomic databases

PaxDbiQ9VFE4.
PRIDEiQ9VFE4.

Expressioni

Gene expression databases

BgeeiFBgn0038277.
GenevisibleiQ9VFE4. DM.

Interactioni

Protein-protein interaction databases

BioGridi66877. 8 interactions.
DIPiDIP-23034N.
IntActiQ9VFE4. 15 interactions.
MINTiMINT-805402.
STRINGi7227.FBpp0082465.

Structurei

3D structure databases

ProteinModelPortaliQ9VFE4.
SMRiQ9VFE4. Positions 41-230.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S7P family.Curated

Phylogenomic databases

eggNOGiKOG3291. Eukaryota.
COG0049. LUCA.
GeneTreeiENSGT00390000010806.
InParanoidiQ9VFE4.
OMAiVTEWPEI.
OrthoDBiEOG091G0KXZ.
PhylomeDBiQ9VFE4.

Family and domain databases

CDDicd14867. uS7_Eukaryote. 1 hit.
Gene3Di1.10.455.10. 1 hit.
InterProiIPR000235. Ribosomal_S5/S7.
IPR005716. Ribosomal_S5/S7_euk/arc.
IPR020606. Ribosomal_S7_CS.
IPR023798. Ribosomal_S7_dom.
[Graphical view]
PANTHERiPTHR11205. PTHR11205. 1 hit.
PfamiPF00177. Ribosomal_S7. 1 hit.
[Graphical view]
PIRSFiPIRSF002122. RPS7p_RPS7a_RPS5e_RPS7o. 1 hit.
SUPFAMiSSF47973. SSF47973. 1 hit.
TIGRFAMsiTIGR01028. uS7_euk_arch. 1 hit.
PROSITEiPS00052. RIBOSOMAL_S7. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9VFE4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEEVVESSS QEASQVIPQE QEDWADDVVT TMPAQEVTEW PEIKLFGRWA
60 70 80 90 100
CDDISISDIS LQDYIAVKEK FARYLPHSAG RYAAKRFRKA QCPIVERLTS
110 120 130 140 150
GLMMKGRSNG KKLLACRIVK HAFEIIHLLT SENPLQVTVN AIVNSGPRED
160 170 180 190 200
STRIGRAGTV RRQAVDVSPL RRVNQAIWLI CTGAREAAFR NIKTVAECLA
210 220 230
DELINAAKGS SNSYAIKKKD ELERVAKSNR
Length:230
Mass (Da):25,716
Last modified:May 1, 2000 - v1
Checksum:i9EF9D04BA6EC4DEB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014297 Genomic DNA. Translation: AAF55116.1.
AY071138 mRNA. Translation: AAL48760.1.
RefSeqiNP_650407.1. NM_142150.3.
UniGeneiDm.1204.

Genome annotation databases

EnsemblMetazoaiFBtr0083006; FBpp0082465; FBgn0038277.
GeneIDi41807.
KEGGidme:Dmel_CG7014.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014297 Genomic DNA. Translation: AAF55116.1.
AY071138 mRNA. Translation: AAL48760.1.
RefSeqiNP_650407.1. NM_142150.3.
UniGeneiDm.1204.

3D structure databases

ProteinModelPortaliQ9VFE4.
SMRiQ9VFE4. Positions 41-230.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi66877. 8 interactions.
DIPiDIP-23034N.
IntActiQ9VFE4. 15 interactions.
MINTiMINT-805402.
STRINGi7227.FBpp0082465.

Proteomic databases

PaxDbiQ9VFE4.
PRIDEiQ9VFE4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiFBtr0083006; FBpp0082465; FBgn0038277.
GeneIDi41807.
KEGGidme:Dmel_CG7014.

Organism-specific databases

CTDi41807.
FlyBaseiFBgn0038277. RpS5b.

Phylogenomic databases

eggNOGiKOG3291. Eukaryota.
COG0049. LUCA.
GeneTreeiENSGT00390000010806.
InParanoidiQ9VFE4.
OMAiVTEWPEI.
OrthoDBiEOG091G0KXZ.
PhylomeDBiQ9VFE4.

Enzyme and pathway databases

ReactomeiR-DME-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-DME-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-DME-6791226. Major pathway of rRNA processing in the nucleolus.
R-DME-72649. Translation initiation complex formation.
R-DME-72689. Formation of a pool of free 40S subunits.
R-DME-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-DME-72702. Ribosomal scanning and start codon recognition.
R-DME-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-DME-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-DME-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

GenomeRNAii41807.
PROiQ9VFE4.

Gene expression databases

BgeeiFBgn0038277.
GenevisibleiQ9VFE4. DM.

Family and domain databases

CDDicd14867. uS7_Eukaryote. 1 hit.
Gene3Di1.10.455.10. 1 hit.
InterProiIPR000235. Ribosomal_S5/S7.
IPR005716. Ribosomal_S5/S7_euk/arc.
IPR020606. Ribosomal_S7_CS.
IPR023798. Ribosomal_S7_dom.
[Graphical view]
PANTHERiPTHR11205. PTHR11205. 1 hit.
PfamiPF00177. Ribosomal_S7. 1 hit.
[Graphical view]
PIRSFiPIRSF002122. RPS7p_RPS7a_RPS5e_RPS7o. 1 hit.
SUPFAMiSSF47973. SSF47973. 1 hit.
TIGRFAMsiTIGR01028. uS7_euk_arch. 1 hit.
PROSITEiPS00052. RIBOSOMAL_S7. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS5B_DROME
AccessioniPrimary (citable) accession number: Q9VFE4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 25, 2004
Last sequence update: May 1, 2000
Last modified: September 7, 2016
This is version 101 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programDrosophila annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Drosophila
    Drosophila: entries, gene names and cross-references to FlyBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.