Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

40S ribosomal protein S5b

Gene

RpS5b

Organism
Drosophila melanogaster (Fruit fly)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: GO_Central
  • rRNA binding Source: GO_Central
  • structural constituent of ribosome Source: FlyBase

GO - Biological processi

  • cytoplasmic translation Source: FlyBase
  • ribosomal small subunit assembly Source: GO_Central

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-DME-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-DME-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-DME-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-DME-72649. Translation initiation complex formation.
R-DME-72689. Formation of a pool of free 40S subunits.
R-DME-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-DME-72702. Ribosomal scanning and start codon recognition.
R-DME-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-DME-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-DME-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S5b
Gene namesi
Name:RpS5b
Synonyms:RpS5
ORF Names:CG7014
OrganismiDrosophila melanogaster (Fruit fly)
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome 3R

Organism-specific databases

FlyBaseiFBgn0038277. RpS5b.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001245311 – 23040S ribosomal protein S5bAdd BLAST230

Proteomic databases

PaxDbiQ9VFE4.
PRIDEiQ9VFE4.

Expressioni

Gene expression databases

BgeeiFBgn0038277.
ExpressionAtlasiQ9VFE4. differential.
GenevisibleiQ9VFE4. DM.

Interactioni

Protein-protein interaction databases

BioGridi66877. 8 interactors.
DIPiDIP-23034N.
IntActiQ9VFE4. 15 interactors.
MINTiMINT-805402.
STRINGi7227.FBpp0082465.

Structurei

3D structure databases

ProteinModelPortaliQ9VFE4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3291. Eukaryota.
COG0049. LUCA.
GeneTreeiENSGT00390000010806.
InParanoidiQ9VFE4.
KOiK02989.
OMAiANEWPEI.
OrthoDBiEOG091G0KXZ.
PhylomeDBiQ9VFE4.

Family and domain databases

CDDicd14867. uS7_Eukaryote. 1 hit.
Gene3Di1.10.455.10. 1 hit.
InterProiView protein in InterPro
IPR000235. Ribosomal_S5/S7.
IPR005716. Ribosomal_S5/S7_euk/arc.
IPR020606. Ribosomal_S7_CS.
IPR023798. Ribosomal_S7_dom.
IPR036823. Ribosomal_S7_dom_sf.
PANTHERiPTHR11205. PTHR11205. 1 hit.
PfamiView protein in Pfam
PF00177. Ribosomal_S7. 1 hit.
PIRSFiPIRSF002122. RPS7p_RPS7a_RPS5e_RPS7o. 1 hit.
SUPFAMiSSF47973. SSF47973. 1 hit.
TIGRFAMsiTIGR01028. uS7_euk_arch. 1 hit.
PROSITEiView protein in PROSITE
PS00052. RIBOSOMAL_S7. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9VFE4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEEVVESSS QEASQVIPQE QEDWADDVVT TMPAQEVTEW PEIKLFGRWA
60 70 80 90 100
CDDISISDIS LQDYIAVKEK FARYLPHSAG RYAAKRFRKA QCPIVERLTS
110 120 130 140 150
GLMMKGRSNG KKLLACRIVK HAFEIIHLLT SENPLQVTVN AIVNSGPRED
160 170 180 190 200
STRIGRAGTV RRQAVDVSPL RRVNQAIWLI CTGAREAAFR NIKTVAECLA
210 220 230
DELINAAKGS SNSYAIKKKD ELERVAKSNR
Length:230
Mass (Da):25,716
Last modified:May 1, 2000 - v1
Checksum:i9EF9D04BA6EC4DEB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014297 Genomic DNA. Translation: AAF55116.1.
AY071138 mRNA. Translation: AAL48760.1.
RefSeqiNP_650407.1. NM_142150.3.
UniGeneiDm.1204.

Genome annotation databases

EnsemblMetazoaiFBtr0083006; FBpp0082465; FBgn0038277.
GeneIDi41807.
KEGGidme:Dmel_CG7014.

Similar proteinsi

Entry informationi

Entry nameiRS5B_DROME
AccessioniPrimary (citable) accession number: Q9VFE4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 25, 2004
Last sequence update: May 1, 2000
Last modified: October 25, 2017
This is version 113 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programDrosophila annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Drosophila
    Drosophila: entries, gene names and cross-references to FlyBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families