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Q9VEL2 (Q9VEL2_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 84. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Brf, isoform B EMBL ACZ94932.1

LD32109p EMBL AAK93235.1
Gene names
Name:Brf FlyBase FBgn0038499 EMBL AAF55409.2
ORF Names:Dmel_CG31256 EMBL AAF55409.2
OrganismDrosophila melanogaster (Fruit fly)
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryotaMetazoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora

Protein attributes

Sequence length662 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q9VEL2 [UniParc].

Last modified October 1, 2002. Version 2.
Checksum: 797F53CC1F30DDC8

FASTA66273,646
        10         20         30         40         50         60 
MSTGLKCRNC GSNEIEEDNA RGDRVCMNCG SVLEDSLIVS EVQFEEVGHG AAAIGQFVSA 

        70         80         90        100        110        120 
ESSGGATNYG YGKFQVGSGT ESREVTIKKA KKDITLLCQQ LQLSQHYADT ALNFFKMALG 

       130        140        150        160        170        180 
RHLTRGRKST HIYAACVYMT CRTEGTSHLL IDISDVQQIC SYELGRTYLK LSHALCINIP 

       190        200        210        220        230        240 
SLDPCLYIMR FANRLQLGAK THEVSMTALR IVQRMKKDCM HSGRRPTGLC GAALLIAARM 

       250        260        270        280        290        300 
HDFSRTMLDV IGVVKIHEST LRKRLSEFAE TPSGGLTLEE FMTVDLEREQ DPPSFKAARK 

       310        320        330        340        350        360 
KDRERIKDMG EHELTELQKE IDAHLEKDLG KYSNSVYRQL TKGKGLSPLS SPSTPNSSSE 

       370        380        390        400        410        420 
KDIELEESRQ FIEQSNAEVI KELIAKNEDV KKSEPGGLVA GIEGLRPDIE AICRVTQSDL 

       430        440        450        460        470        480 
EDVEKAKQPQ EQELITDDLN DDELDQYVLT EEESVAKLEM WKNLNAEYLQ EQKERDERLA 

       490        500        510        520        530        540 
KEREEGKPER KKRKPRKKVI GPSSTAGEAI EKMLQEKKIS SKINYEILKT LTDGMGGLTD 

       550        560        570        580        590        600 
DSPTTSADTK PSTLEELKHQ PVIVEEGPVA SKSRGNRAAY DLPGPSRKRP KLEVGLPVSK 

       610        620        630        640        650        660 
AADVEQAETK PAVVVEADDL DEDADDPDVE PEAEPEATLQ DMLNTGGDDD EFGYGFDEEE 


EY 

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References

« Hide 'large scale' references
[1]"The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
Smith C.D., Shu S., Mungall C.J., Karpen G.H.
Science 316:1586-1591(2007) [PubMed: 17569856] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Sequence finishing and mapping of Drosophila melanogaster heterochromatin."
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M., Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A., Dimitri P., Karpen G.H., Celniker S.E.
Science 316:1625-1628(2007) [PubMed: 17569867] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[3]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[4]"Combined evidence annotation of transposable elements in genome sequences."
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
PLoS Comput. Biol. 1:166-175(2005) [PubMed: 16110336] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley.
[6]"Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
Genome Biol. 3:RESEARCH0085.1-RESEARCH0085.16(2002) [PubMed: 12537574] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[7]"The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J.W., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) [PubMed: 12537573] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[8]"Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence."
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A., Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A., George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R., Pacleb J.M., Park S. expand/collapse author list , Pfeiffer B.D., Richards S., Sodergren E.J., Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C., Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.
Genome Biol. 3 (12), RESEARCH0079 (2002)
Cited for: NUCLEOTIDE SEQUENCE.
[9]Drosophila Heterochromatin Genome Project
Smith C.D., Shu S., Mungall C.J., Karpen G.H.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[10]FlyBase
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[11]Stapleton M., Carlson J., Chavez C., Frise E., George R., Pacleb J., Park S., Wan K., Yu C., Celniker S.
Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley EMBL AAK93235.1.
[12]"Drosophila melanogaster release 4 sequence."
Berkeley Drosophila Genome Project
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[13]Celniker S., Carlson J., Kennedy C., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Karpen G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[14]Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE014297 Genomic DNA. Translation: AAF55409.2.
AY051811 mRNA. Translation: AAK93235.1.
AE014297 Genomic DNA. Translation: ACZ94932.1.
RefSeqNP_001163636.1. NM_001170165.1.
NP_650616.2. NM_142359.2.
UniGeneDm.3275.

3D structure databases

HSSPHSSP built from PDB template 1AIS based on UniProtKB P61999.
ProteinModelPortalQ9VEL2.
SMRQ9VEL2. Positions 1-278, 434-479.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ9VEL2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0083452; FBpp0082893; FBgn0038499.
FBtr0302317; FBpp0291523; FBgn0038499.
GeneID42087.
KEGGdme:Dmel_CG31256.
NMPDRfig|7227.3.peg.13278.
UCSCCG31256-RA. d. melanogaster.

Organism-specific databases

CTD42087.
FlyBaseFBgn0038499. Brf.

Phylogenomic databases

eggNOGinNOG05207.
GeneTreeEMGT00050000012128.
InParanoidQ9VEL2.
OMAARGSAVC.
PhylomeDBQ9VEL2.

Gene expression databases

ArrayExpressQ9VEL2.
BgeeQ9VEL2.

Family and domain databases

InterProIPR011665. BRF1_TBP-bd.
IPR013763. Cyclin-like.
IPR000812. TFIIB.
IPR013150. TFIIB_cyclin.
IPR013137. Znf_TFIIB.
[Graphical view]
Gene3DG3DSA:1.10.472.10. Cyclin_related. 2 hits.
KOK15196.
PANTHERPTHR11618. TFIIB_euk_relate. 1 hit.
PfamPF07741. BRF1. 1 hit.
PF08271. TF_Zn_Ribbon. 1 hit.
PF00382. TFIIB. 2 hits.
[Graphical view]
PRINTSPR00685. TIFACTORIIB.
SMARTSM00385. CYCLIN. 2 hits.
[Graphical view]
SUPFAMSSF47954. Cyclin_like. 2 hits.
PROSITEPS51134. ZF_TFIIB. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio827104.

Entry information

Entry nameQ9VEL2_DROME
AccessionPrimary (citable) accession number: Q9VEL2
Secondary accession number(s): Q960W2
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: October 1, 2002
Last modified: January 25, 2012
This is version 84 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)