Unreviewed, UniProtKB/TrEMBL Q9VEJ1 (Q9VEJ1_DROME)

Names and origin

Protein names

Submitted name:
    Splicing factor 1 EMBL AAF55430.3
Submitted name:
    LD36095p EMBL ABY20506.1

Gene names

Name:	SF1 EMBL AAF55430.3 FlyBase FBgn0025571
ORF Names:	Dmel_CG5836 EMBL AAF55430.3

Organism

Drosophila melanogaster (Fruit fly) [Complete proteome]

Taxonomic identifier

7227 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora

Protein attributes

Sequence length	787 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Sequence similarities

Contains 1 KH domain. RuleBase RU003302V0

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Cellular component	nucleus Inferred from direct assay. Source: FlyBase
Molecular function	RNA binding Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9VEJ1-1 [UniParc]. Last modified October 1, 2002. Version 3. Checksum: CE47745F1DD4064A	FASTA	787	87,374
	10 20 30 40 50 60 MSATPPDLLS LAASREVSAA VAVAASANGG SGRSADKERS RSRDRGRDKD KDRDKDRKKR 70 80 90 100 110 120 DKDSRDRDSR RRDDRGDRDR DRERDRDSRS HRSKSRNYDD GDRRRKRSRS RDRDRDRKRD 130 140 150 160 170 180 RDRDSRSRRS SSRGGRDDYD RSRRRRSRSR SYERRRNDRG SQRDQRDQHS QRSSRERTHV 190 200 210 220 230 240 NPFDTSNSRN SLNQDHDQSR IPSLFDRQQG LETIREEGRE QRFDLTQTIQ ELMGNAGGNK 250 260 270 280 290 300 GFASFFNSQN SNDSTSNGAF DNSADSAAER KRKRKSRWGG SENDKTFIPG MPTILPSTLD 310 320 330 340 350 360 PAQQEAYLVQ FQIEEISRKL RTGDLGITQN PEERSPSPEP IYSSDGKRLN TREFRYRKRL 370 380 390 400 410 420 EEQRHQLIVK MQTVNPEFKP PADYKPPVTR VSDKVLIPQE QHPDINFVGL LIGPRGNTLK 430 440 450 460 470 480 AMEKDTGAKI IIRGKGSVKE GKVGRKDGQP LPGEDEPLHA FITAPNPEAV RKAVDKIKDV 490 500 510 520 530 540 IRQGIEVPEG HNDLRRMQLR ELAQLNGTLR ENDIQRCTCG STDHKSWQCP DKPIITNTIV 550 560 570 580 590 600 CTSCGGTGHL TKDCRNKRPG SGVPGMACED SQAKIDEEYM SLMAELGEGP PPPSASAKTD 610 620 630 640 650 660 PPASNGPQLH RASYSIFDKK PSQMQAIQSP PSSSSRDHQR DLGGWGAAAH EHGMGMEHGM 670 680 690 700 710 720 GLDQHGHGLA AMDHGMSLGM EHAMAAYVPA PPGTQAPPPM PPPLMPWMSA PQPPPPATEP 730 740 750 760 770 780 LNPPIPGTLP PLIPPPPGTS APPMPPWGGG AYSGWGGGYA PPPPPPCAPP PPALSLSQPP PPPPPSA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review." Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E. Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Berkeley.
[2]	"The genome sequence of Drosophila melanogaster." Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C. Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Berkeley.
[3]	Stapleton M., Carlson J., Frise E., Kapadia B., Park S., Wan K., Yu C., Celniker S. Submitted (DEC-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Berkeley EMBL ABY20506.1.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AE014297 Genomic DNA. Translation: AAF55430.3. BT031265 mRNA. Translation: ABY20506.1.
RefSeq	NP_524654.2.
UniGene	Dm.3761
3D structure databases
HSSP	HSSP built from PDB template 1K1G based on UniProtKB Q9BW01.
SMR	Q9VEJ1. Positions 389-510.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q9VEJ1. 1 interaction.
Genome annotation databases
Ensembl	FBgn0025571. Drosophila melanogaster. [Contig view]
GeneID	43912.
KEGG	dme:Dmel_CG5836.
NMPDR	fig|7227.3.peg.13303.
Organism-specific databases
FlyBase	FBgn0025571. SF1.
Phylogenomic databases
HOGENOM	Q9VEJ1.
OMA	Q9VEJ1. NTREYRY.
Gene expression databases
ArrayExpress	Q9VEJ1.
Family and domain databases
InterPro	IPR004087. KH. IPR004088. KH_type_1. IPR018111. KH_type_1_subgr. IPR001878. Znf_CCHC. [Graphical view]
Pfam	PF00013. KH_1. 1 hit. PF00098. zf-CCHC. 1 hit. [Graphical view]
SMART	SM00322. KH. 1 hit. SM00343. ZnF_C2HC. 2 hits. [Graphical view]
PROSITE	PS50084. KH_TYPE_1. 1 hit. PS50158. ZF_CCHC. 1 hit. [Graphical view]
ProtoNet	Search...
Other Resources
NextBio	836343.

Entry information

Entry name

Q9VEJ1_DROME

Accession

Primary (citable) accession number: Q9VEJ1

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	October 1, 2002
Last modified:	June 16, 2009
This is version 63 of the entry and version 3 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)