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Q9VDN4 (Q9VDN4_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 93. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
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Names and origin

Protein namesSubmitted name:
CG4360, isoform A EMBL AAF55756.1
Gene names
ORF Names:CG4360 FlyBase FBgn0038787, Dmel_CG4360 EMBL AAF55756.1
OrganismDrosophila melanogaster (Fruit fly)
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora

Protein attributes

Sequence length556 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular componentintracellular

Inferred from electronic annotation. Source: InterPro

   Molecular functionnucleic acid binding

Inferred from electronic annotation. Source: InterPro

zinc ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q9VDN4 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 48E41F209969E95D

FASTA55660,441
        10         20         30         40         50         60 
MHLNHATAAT AAMANYQHYQ LPASHGGGGG GGGGGGGGGG SNGGSGPGPN SGQQQPTTLA 

        70         80         90        100        110        120 
SLQQSPFALH QLTAVQAIQH PTHQAMLHPQ HPLVHLLDIS TTTANSGGGG GGSHTPISPM 

       130        140        150        160        170        180 
KQEVQSVISE EEVVVDDPRK KKQCHVCKNK FRQLTTLRNH MKIHTDERPY KCKHCDKAFR 

       190        200        210        220        230        240 
QISTLTNHVK IHTGEKPFTC NICAKDFRQQ STLINHIKTH KAAESSTPTS LLNYQPQTGS 

       250        260        270        280        290        300 
GKHRKSQMHQ AYQQQHQRVQ ISKTLYSGSY SSPAAEELVK PFQCSVCKRR FPQLSTLHNH 

       310        320        330        340        350        360 
ERTHIDPKPY KCETCDKSFS QLATLANHKK IHTGDKPYTC SYCHMQFRQQ STLTNHLKTH 

       370        380        390        400        410        420 
THQIAPGGVG GAGGGGGAVT ATVDHSMPAP LAPGTQQLTS GLLPNNLHGS TANIIQLDHH 

       430        440        450        460        470        480 
PLLHFLDGST TVSSVVATAA ANTKVEHFQA GGSPSGRMTV VGTINMLKGD NPDRPFGCSV 

       490        500        510        520        530        540 
CQRFFSQQST LVNHIKTHTG EKPYKCKICE VNFRQVATLN NHMKIHTGEK PYNCSFCPKQ 

       550 
FRQKSTLQNH LRVHTC

« Hide

References

« Hide 'large scale' references
[1]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley.
[2]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE014297 Genomic DNA. Translation: AAF55756.1.
RefSeqNP_650879.1. NM_142622.2.

3D structure databases

HSSPHSSP built from PDB template 1F2I based on UniProtKB P08046.
ProteinModelPortalQ9VDN4.
SMRQ9VDN4. Positions 158-224, 306-365, 460-555.
ModBaseSearch...

Protein-protein interaction databases

IntActQ9VDN4. 1 interaction.
MINTMINT-305856.

Proteomic databases

PRIDEQ9VDN4.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0083899; FBpp0083307; FBgn0038787.
GeneID42413.
KEGGdme:Dmel_CG4360.
NMPDRfig|7227.3.peg.13705.
UCSCCG4360-RA. d. melanogaster.

Organism-specific databases

FlyBaseFBgn0038787. CG4360.

Phylogenomic databases

GeneTreeEMGT00070000025668.
InParanoidQ9VDN4.
OMAFRQQSTL.
PhylomeDBQ9VDN4.

Gene expression databases

ArrayExpressQ9VDN4.
BgeeQ9VDN4.

Family and domain databases

InterProIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
Gene3DG3DSA:3.30.160.60. Znf_C2H2/integrase_DNA-bd. 9 hits.
PfamPF00096. zf-C2H2. 9 hits.
[Graphical view]
SMARTSM00355. ZnF_C2H2. 9 hits.
[Graphical view]
PROSITEPS00028. ZINC_FINGER_C2H2_1. 9 hits.
PS50157. ZINC_FINGER_C2H2_2. 9 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio828663.

Entry information

Entry nameQ9VDN4_DROME
AccessionPrimary (citable) accession number: Q9VDN4
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: January 25, 2012
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info