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Protein
Submitted name:

CG5466

Gene

CG5466

Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  1. cellular process Source: FlyBase
  2. neurogenesis Source: FlyBase
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
CG5466Imported
Submitted name:
GH15831pImported
Gene namesi
ORF Names:CG5466Imported, Dmel_CG5466Imported
OrganismiDrosophila melanogaster (Fruit fly)Imported
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
ProteomesiUP000000803 Componenti: Chromosome 3R

Organism-specific databases

FlyBaseiFBgn0038815. CG5466.

Expressioni

Gene expression databases

BgeeiQ9VDK2.
ExpressionAtlasiQ9VDK2. differential.

Interactioni

Protein-protein interaction databases

IntActiQ9VDK2. 3 interactions.
MINTiMINT-277774.

Family & Domainsi

Phylogenomic databases

InParanoidiQ9VDK2.
OMAiIRPSMCK.
PhylomeDBiQ9VDK2.

Family and domain databases

InterProiIPR022207. GSE-like.
[Graphical view]
PfamiPF12540. DUF3736. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9VDK2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNNLEHSKHF YPDNYKLDLS ETMKAALSKG PGGGAGGGGV AGGDMLPQPN
60 70 80 90 100
AGMPGVGYVT EKLYMLLQLY LQNKGWNPSA ELLQCFSDLK DNAMLPSAAY
110 120 130 140 150
LQVLANRLTL DSQGRLILRD NGKIVLPFEH FANAVMLKHM SGPHGLHLSV
160 170 180 190 200
DATVRAVIES YTIGRDQFGM EKEFIIEVVQ SCPSPACRYY KNHMGISPMP
210 220 230 240 250
FMEQQYPGVN TPEFLQRLAH LPPGGAAGSG PGGSAAGSTS SVASSSSSAN
260 270 280 290 300
VEIDLSKSTG AKVPQVPVPP QLQHLTKQQQ STLQTQLSQI SAAAAHHQQQ
310 320 330 340 350
QQQQQQQQQQ QQQQQQQAAA KHQQQLTAAL IQQQNRVLAQ QNLEKLSNHL
360 370 380 390 400
SPLEKQRVFA QLDPKHFDPM AVAAAAANLQ IQGLMQSQAV AAAVAANQQT
410 420 430 440 450
PAATTTSAAG GAAAGPQAHH GHHPLPPPSQ SPHSSSSSSS HSSLDQITHK
460 470 480 490 500
NVADSLRSNL DSIESNKDLL ALHNGAWATG DANRMDHLAV GQDKIVRIFA
510 520 530 540 550
ELMRNMSRMK TYIRPSMCKP YGKQSESLQK TLMDTIQIVQ TLRNCLPAPH
560 570 580 590
IPVSSWKSES EGNVGSGVSA GVGVGVPAGL NLGAALGLPS GNMH
Length:594
Mass (Da):63,383
Last modified:July 5, 2004 - v2
Checksum:i2366C40BE1547642
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014297 Genomic DNA. Translation: AAF55789.2.
BT024452 mRNA. Translation: ABC86514.1.
RefSeqiNP_650901.2. NM_142644.2.
UniGeneiDm.4010.

Genome annotation databases

EnsemblMetazoaiFBtr0083913; FBpp0083321; FBgn0038815.
GeneIDi42444.
KEGGidme:Dmel_CG5466.
UCSCiCG5466-RA. d. melanogaster.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014297 Genomic DNA. Translation: AAF55789.2.
BT024452 mRNA. Translation: ABC86514.1.
RefSeqiNP_650901.2. NM_142644.2.
UniGeneiDm.4010.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ9VDK2. 3 interactions.
MINTiMINT-277774.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiFBtr0083913; FBpp0083321; FBgn0038815.
GeneIDi42444.
KEGGidme:Dmel_CG5466.
UCSCiCG5466-RA. d. melanogaster.

Organism-specific databases

FlyBaseiFBgn0038815. CG5466.

Phylogenomic databases

InParanoidiQ9VDK2.
OMAiIRPSMCK.
PhylomeDBiQ9VDK2.

Miscellaneous databases

GenomeRNAii42444.
NextBioi828809.

Gene expression databases

BgeeiQ9VDK2.
ExpressionAtlasiQ9VDK2. differential.

Family and domain databases

InterProiIPR022207. GSE-like.
[Graphical view]
PfamiPF12540. DUF3736. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The genome sequence of Drosophila melanogaster."
    Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D.
    , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
    Science 287:2185-2195(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  3. Cited for: GENOME REANNOTATION.
    Strain: BerkeleyImported.
  4. "The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
    Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
    Genome Biol. 3:RESEARCH0084-RESEARCH0084(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  5. "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
    Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
    Genome Biol. 3:RESEARCH0085-RESEARCH0085(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  6. "Combined evidence annotation of transposable elements in genome sequences."
    Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
    PLoS Comput. Biol. 1:166-175(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  7. Stapleton M., Carlson J., Chavez C., Frise E., George R., Pacleb J., Park S., Wan K., Yu C., Celniker S.
    Submitted (DEC-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BerkeleyImported.
  8. "Drosophila melanogaster release 4 sequence."
    Berkeley Drosophila Genome Project
    Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  9. Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  10. "The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
    Smith C.D., Shu S., Mungall C.J., Karpen G.H.
    Science 316:1586-1591(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  11. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BerkeleyImported.
  12. FlyBase
    Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ9VDK2_DROME
AccessioniPrimary (citable) accession number: Q9VDK2
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: July 5, 2004
Last modified: April 1, 2015
This is version 108 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.