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Q9VC60 (Q9VC60_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 81. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
CG13625 EMBL AAF56315.1
Submitted name:
GH07383p EMBL AAK77291.1
Gene names
ORF Names:CG13625 EMBL AAK77291.1 FlyBase FBgn0039210, Dmel_CG13625 EMBL AAF56315.1
OrganismDrosophila melanogaster (Fruit fly)
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora

Protein attributes

Sequence length647 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological processnuclear mRNA splicing, via spliceosome

Inferred by curator. Source: FlyBase

   Cellular componentcatalytic step 2 spliceosome

Inferred from direct assay. Source: FlyBase

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q9VC60 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: E4B4E2FE5482A663

FASTA64776,498
        10         20         30         40         50         60 
MSMQKAKVID QKEYLKKYLS GDKEKKKKKK EKKHKKNSAN TKVKIIDDDA YENDNLEMDE 

        70         80         90        100        110        120 
DLLLGGEDAP QIVGEYIEED PNVRSKWRNI AVKDEIKEEH EESSPATGIR IKQEPLDEEQ 

       130        140        150        160        170        180 
EMWGRKATVV KVKDEFSPSR RSSPVRIKQE KRSSSRDLSP ARSSKPAKRE ESPQRGRRRA 

       190        200        210        220        230        240 
GSSDQSPTRR GRDGDQSPPR QKHRDSDQSP PRKARNGNQS PVRKRRDSDQ SPPRKRTGKA 

       250        260        270        280        290        300 
SPTRRRRDSD QSPPRRRRSN SDQSPPRRRR DKDSTPPRRR KDSDQSPPRR RKADDQSPVR 

       310        320        330        340        350        360 
RERKDSDQSP PRKRRDNDQS PVRRRRDSDQ SPPRRRRDDK QTPPRRRRNS DQSPPRRPKD 

       370        380        390        400        410        420 
VDQSPPRRKR DFDQSPTRKR DKSPRRRHDS DQSPARNHRS RERSPPPRNR FKEERKSRWA 

       430        440        450        460        470        480 
KASPSKSASP PPTHKPKSTK TLDGKKAGLQ DAKSLKKETD ERRRQEHELF EKMSSEISGR 

       490        500        510        520        530        540 
DGDVQVRSTR RKGHRARDAA NEDPAEQGRK EEHEKKKKEL YDRWGKGLKQ IEDHKSRLEE 

       550        560        570        580        590        600 
MVHEASKPVA RYANDEDLDR HLREQEHADD PMLEYMRQKR KKRDQQDNKP VMPKYEGSFP 

       610        620        630        640 
ENRFGIRPGY RWDGVDRSNG YEQRWFDKQN ERRAVQDEAY KYSVEDM

« Hide

References

« Hide 'large scale' references
[1]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[2]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley.
[3]Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J., Champe M., Chavez C., Dorsett V., Farfan D., Frise E., George R., Gonzalez M., Guarin H., Li P., Liao G., Miranda A., Mungall C.J., Nunoo J. expand/collapse author list , Pacleb J., Paragas V., Park S., Phouanenavong S., Wan K., Yu C., Lewis S.E., Rubin G.M., Celniker S.
Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley EMBL AAK77291.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE014297 Genomic DNA. Translation: AAF56315.1.
AY047559 mRNA. Translation: AAK77291.1.
RefSeqNP_651272.1. NM_143015.2.
UniGeneDm.4647.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

IntActQ9VC60. 15 interactions.
MINTMINT-280262.

Proteomic databases

PRIDEQ9VC60.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0084671; FBpp0084051; FBgn0039210.
GeneID42931.
KEGGdme:Dmel_CG13625.
NMPDRfig|7227.3.peg.14467.
UCSCCG13625-RA. d. melanogaster.

Organism-specific databases

FlyBaseFBgn0039210. CG13625.

Phylogenomic databases

eggNOGinNOG06967.
GeneTreeEMGT00050000000798.
InParanoidQ9VC60.
OMAAYLWSVS.
OrthoDBEOG4905R6.
PhylomeDBQ9VC60.

Gene expression databases

ArrayExpressQ9VC60.
BgeeQ9VC60.

Family and domain databases

InterProIPR018609. Bud13.
[Graphical view]
KOK13106.
PfamPF09736. Bud13. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio831344.

Entry information

Entry nameQ9VC60_DROME
AccessionPrimary (citable) accession number: Q9VC60
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: January 25, 2012
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info