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Q9VA97 (Q9VA97_DROME) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 83. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
CG1983 EMBL AAF57017.2
Submitted name:
RE46560p EMBL AAO39501.1
Gene names
ORF Names:CG1983 EMBL AAO39501.1 FlyBase FBgn0039751, Dmel_CG1983 EMBL AAF57017.2
OrganismDrosophila melanogaster (Fruit fly)
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora

Protein attributes

Sequence length254 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. PIRSR PIRSR004848-1

Sequence similarities

Belongs to the UPF0001 family. RuleBase RU004514

Ontologies

Keywords
   LigandPyridoxal phosphate PIRSR PIRSR004848-1
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular functionpyridoxal phosphate binding

Inferred from Biological aspect of Ancestor. Source: RefGenome

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Amino acid modifications

Modified residue451N6-(pyridoxal phosphate)lysine By similarity PIRSR PIRSR004848-1

Sequences

Sequence LengthMass (Da)Tools
Q9VA97 [UniParc].

Last modified July 5, 2004. Version 2.
Checksum: 617FA241F44CCEDE

FASTA25428,273
        10         20         30         40         50         60 
MLRRTMAEFD VKAGLQHVLK RIDEVLLQRP KEVQAARPLL VAVSKTKPAE AVIEAYEGGQ 

        70         80         90        100        110        120 
RDFGENYVQE LEEKSRHPDI LAKCPDIRWH FIGHMQSNKI NKILSVPNLH MIQTVDSEKL 

       130        140        150        160        170        180 
ATKLDAAWSK RQPTPEEPLQ VLIQINTSGE DVKSGIEAKD APALYQYIKS NLKHLNLMGI 

       190        200        210        220        230        240 
MTIGAFGFDY SNGPNPDFVS LMQVHRSICE AHSLAPDSVL VSMGMSNDFD KAIEMGSTVV 

       250 
RVGSSIFGHR AAKV

« Hide

References

« Hide 'large scale' references
[1]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[2]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley.
[3]Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J., Champe M., Chavez C., Dorsett V., Dresnek D., Farfan D., Frise E., George R., Gonzalez M., Guarin H., Kronmiller B., Li P., Liao G., Miranda A. expand/collapse author list , Mungall C.J., Nunoo J., Pacleb J., Paragas V., Park S., Patel S., Phouanenavong S., Wan K., Yu C., Lewis S.E., Rubin G.M., Celniker S.
Submitted (FEB-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley EMBL AAO39501.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE014297 Genomic DNA. Translation: AAF57017.2.
BT003497 mRNA. Translation: AAO39501.1.
RefSeqNP_651776.2. NM_143519.2.
UniGeneDm.16302.

3D structure databases

HSSPHSSP built from PDB template 1CT5 based on UniProtKB P38197.
ProteinModelPortalQ9VA97.
SMRQ9VA97. Positions 9-248.
ModBaseSearch...

Protein-protein interaction databases

IntActQ9VA97. 1 interaction.
MINTMINT-294288.
STRINGQ9VA97.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0085574; FBpp0084940; FBgn0039751.
GeneID43588.
KEGGdme:Dmel_CG1983.
NMPDRfig|7227.3.peg.15403.
UCSCCG1983-RA. d. melanogaster.

Organism-specific databases

FlyBaseFBgn0039751. CG1983.

Phylogenomic databases

eggNOGinNOG05829.
GeneTreeEMGT00050000017273.
InParanoidQ9VA97.
OMAAVSKTFE.
OrthoDBEOG4MSBFD.
PhylomeDBQ9VA97.

Gene expression databases

ArrayExpressQ9VA97.
BgeeQ9VA97.

Family and domain databases

InterProIPR001608. Ala_racemase_N.
IPR011078. UPF0001.
[Graphical view]
KOK06997.
PANTHERPTHR10146. PP_YBL036C. 1 hit.
PfamPF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PIRSFPIRSF004848. YBL036c_PLPDEIII. 1 hit.
TIGRFAMsTIGR00044. TIGR00044. 1 hit.
ProtoNetSearch...

Other

NextBio834722.

Entry information

Entry nameQ9VA97_DROME
AccessionPrimary (citable) accession number: Q9VA97
Secondary accession number(s): Q86P39
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: July 5, 2004
Last modified: January 25, 2012
This is version 83 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info