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Q9V9S7 (SYDE_DROME) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 79. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Rho GTPase-activating protein 100F

Short name=RhoGAP-100F
Alternative name(s):
Synapse defective protein 1 homolog
Short name=Protein syd-1 homolog
Gene names
Name:RhoGAP100F
ORF Names:CG1976
OrganismDrosophila melanogaster (Fruit fly)
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryotaMetazoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora

Protein attributes

Sequence length1866 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state By similarity.

Sequence similarities

Contains 1 C2 domain.

Contains 1 PDZ (DHR) domain.

Contains 1 Rho-GAP domain.

Sequence caution

The sequence AAM11366.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

Ontologies

Keywords
   Coding sequence diversityAlternative splicing
   Molecular functionGTPase activation
   PTMPhosphoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological processactivation of Rho GTPase activity

Inferred from sequence or structural similarity. Source: UniProtKB

signal transduction

Inferred from electronic annotation. Source: InterPro

   Cellular componentintracellular

Inferred from electronic annotation. Source: InterPro

   Molecular functionRho GTPase activator activity

Inferred from sequence or structural similarity. Source: UniProtKB

Complete GO annotation...

Alternative products

This entry describes 3 isoforms produced by alternative splicing. [Align] [Select]
Isoform D (identifier: Q9V9S7-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Note: No experimental confirmation available.
Isoform C (identifier: Q9V9S7-2)

The sequence of this isoform differs from the canonical sequence as follows:
     1-27: MQWKKKFTRLKAATGNSRVRRMLCCGR → MCDSATTGCFLTRSSH
Note: No experimental confirmation available.
Isoform B (identifier: Q9V9S7-3)

The sequence of this isoform differs from the canonical sequence as follows:
     1185-1191: RRGESTG → NVLPASD
     1192-1866: Missing.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 18661866Rho GTPase-activating protein 100F
PRO_0000312161

Regions

Domain179 – 26486PDZ
Domain804 – 88784C2
Domain948 – 1148201Rho-GAP
Compositional bias350 – 3545Poly-Gly
Compositional bias366 – 3705Poly-Pro
Compositional bias538 – 5414Poly-Tyr
Compositional bias1399 – 1788390Ser-rich

Amino acid modifications

Modified residue7191Phosphoserine Ref.4

Natural variations

Alternative sequence1 – 2727MQWKK…LCCGR → MCDSATTGCFLTRSSH in isoform C.
VSP_041784
Alternative sequence1185 – 11917RRGESTG → NVLPASD in isoform B.
VSP_041785
Alternative sequence1192 – 1866675Missing in isoform B.
VSP_041786

Sequences

Sequence LengthMass (Da)Tools
Isoform D [UniParc].

Last modified September 21, 2011. Version 2.
Checksum: A156B00E25BE412A

FASTA1,866198,298
        10         20         30         40         50         60 
MQWKKKFTRL KAATGNSRVR RMLCCGRRKE NGRSVPDVTA SPGRAPPGPL PANQMPAMGN 

        70         80         90        100        110        120 
QQHHGNQQHH GNQQQHHGNQ HSNHRGQSGS LSNAAGVKDP VMLQGDFRKV SGISSEIFRQ 

       130        140        150        160        170        180 
IEAVENDHDP NTAAALEAVE RRGEMIVRVL EPRCMGSKQA VDAAHKLMNK ADARHTVQLV 

       190        200        210        220        230        240 
EIVKRPGQTL GLYIREGNGA DRTDGVFISR IALESAVYNS GCLRVGDEIL AVNLVDVTHM 

       250        260        270        280        290        300 
SLDDVVIIMS IPRRLVLAIR QRRGNRGTGS PGPPTLSRPE QKPPPVVVIK RDLRDEDLDE 

       310        320        330        340        350        360 
TDRMPRPRSS RDRRTGDGRE MTESRSRLGL GLNNYSPQSE QLDMYYNTRG GGGGAMGEPP 

       370        380        390        400        410        420 
NWGYKPPPPP SSVITEQPTK AHAFAPSHAY YQNAGTLESL AEKVHAFYPG QPGGPPVGPS 

       430        440        450        460        470        480 
RRMSTGTGNV GLAQQHARFP RSGSDQHLPR VEYSDYSNSL GRHSLLRSSL KPGTTGGAPM 

       490        500        510        520        530        540 
QVGVGGTLGR YGRYDQQRAG VSKYGPPSGG AQSLTRRSRP NLDYSSDTEA TIGPRPSYYY 

       550        560        570        580        590        600 
YNRPAIGSMS RGSGGAGGGV GAASTAALLA GAADLNKFNS LPRERPGTRL QGIRSRMGDR 

       610        620        630        640        650        660 
LVDENDGNTS APEFDVRRGR DLRQRITASP SIFTADEYRA WLRRAPSSSA IAEQMRMTRD 

       670        680        690        700        710        720 
MFAQPRAQRF SCSAENIHDA LRNTESIYSS RNHILGTGTL DRNMGLTRPI SALPVRSMSS 

       730        740        750        760        770        780 
QHIGGAGSIR SPSIRRMRQL LELSAGPASP SGSILSTGGH QSPAPTPSAT LPRPHRQIDI 

       790        800        810        820        830        840 
NPAEFAKYKL DKPIVDIGGI SGMLWIHLLA GRGLRTAPEG AAGTATQGQT RDLYCVIECD 

       850        860        870        880        890        900 
RVHKARTVVR SGDLQFDWDE SFELDLVGNK QLDVLVYSWD PQHRHKLCYR GAISLSSILR 

       910        920        930        940        950        960 
QSPLHQLALK VEPRGTIYIR MRHTDPLALY KRRGLPSLRA GYPTLFGADL ETVVNRESKN 

       970        980        990       1000       1010       1020 
APGSAPVPIV LRRCVEEVER RGLDIIGLYR LCGSATKKRL LREAFERNSR AVELTPEHVP 

      1030       1040       1050       1060       1070       1080 
DINVITGVLK DYLRELPEPL FTRCLFQMTV DALAVCLPDD PEGNAKLMLS ILDCLPRANR 

      1090       1100       1110       1120       1130       1140 
ATLVFLLDHL SLVVSNSERN KMSAQALATV MGPPLMLHSA SAQPGADIDH AQPIAVLKYL 

      1150       1160       1170       1180       1190       1200 
LQIWPQPQAQ HQQMAQHMGG AAGAMMGGLV TAGSMSNMAG VASGRRGEST GQRGSKVSAL 

      1210       1220       1230       1240       1250       1260 
PADRQQLLLQ QQAQLMAAGN LLRSSTSVTN ILSQGHPQLS ATANNHLYQS VVGQLAQSHR 

      1270       1280       1290       1300       1310       1320 
ALQQAVQQPY QLGGSVGSAI PDPSPLPLPG TPSPGSSSAS TGSGSGSGKS TDTIKRGASP 

      1330       1340       1350       1360       1370       1380 
VSVKQVKIVD QPSSPYSIVM KKPPLQKDAP VEITTPTTQA DTESTLGCKE SNGTASRRGN 

      1390       1400       1410       1420       1430       1440 
VDFYDTHKTQ AKSVVNEESS YSSKYTGSET KKIIPGNSSY TPSKANASGL SGGEDYKAMR 

      1450       1460       1470       1480       1490       1500 
NKSSATSSSS SSQATVLSAG STATSAPTTS SDDSDDLVSY KSSASTNALL AQSQAMTTSQ 

      1510       1520       1530       1540       1550       1560 
LMSKYLKREP RVQFTPIKSP ESPSPPGSGD GLPKGTYQLV TPISGSSSKP GATTGAISKY 

      1570       1580       1590       1600       1610       1620 
TTGSVESSIN ANSQKLSSPS RLCNSKDSNS RTGTASSTTP ATSMVSTGRR LFDSLASSSS 

      1630       1640       1650       1660       1670       1680 
SETETKTYIG GTTAASGAIT TTIYTNDTKN SGSSSSKSGI GGGSGTGLGA VSGASSETRS 

      1690       1700       1710       1720       1730       1740 
FGSTLFGSSG LGNGNGSSHN HSSASPSPFT TTNGNGNHNT MHLYGTLPKN GTSTGAALFG 

      1750       1760       1770       1780       1790       1800 
GSANSSSYHS SASGSGAGTA SSSGVSSMTG STNSYDFYTS TSSTVSSSRP FANGGNNYHT 

      1810       1820       1830       1840       1850       1860 
LGTYRAQYAA TNPFLDAFDE KPGSNGGNAH GEEKLGADKG HHRAAVMAFQ SSGDSKNGSD 


EYDDIK 

« Hide

Isoform C [UniParc].

Checksum: 5BD3843FEF014B79
Show »

FASTA1,855196,788
Isoform B [UniParc].

Checksum: 654287653672CE07
Show »

FASTA1,191129,728

References

« Hide 'large scale' references
[1]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[2]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: Berkeley.
[3]"A Drosophila full-length cDNA resource."
Stapleton M., Carlson J.W., Brokstein P., Yu C., Champe M., George R.A., Guarin H., Kronmiller B., Pacleb J.M., Park S., Wan K.H., Rubin G.M., Celniker S.E.
Genome Biol. 3:RESEARCH0080.1-RESEARCH0080.8(2002) [PubMed: 12537569] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM B), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 938-1866 (ISOFORMS C/D).
Strain: Berkeley.
Tissue: Embryo.
[4]"Phosphoproteome analysis of Drosophila melanogaster embryos."
Zhai B., Villen J., Beausoleil S.A., Mintseris J., Gygi S.P.
J. Proteome Res. 7:1675-1682(2008) [PubMed: 18327897] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-719, MASS SPECTROMETRY.
Tissue: Embryo.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE014297 Genomic DNA. Translation: AAF57207.2.
AE014297 Genomic DNA. Translation: ACZ95078.1.
AE014297 Genomic DNA. Translation: ACZ95079.1.
BT082117 mRNA. Translation: ACQ45355.1.
AY095038 mRNA. Translation: AAM11366.1. Different initiation.
RefSeqNP_001163785.1. NM_001170314.1.
NP_001163786.1. NM_001170315.1.
NP_651902.2. NM_143645.2.
UniGeneDm.12850.

3D structure databases

HSSPHSSP built from PDB template 1B8Q based on UniProtKB P29476.
ProteinModelPortalQ9V9S7.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ9V9S7.

Proteomic databases

PRIDEQ9V9S7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID43758.
KEGGdme:Dmel_CG1976.
NMPDRfig|7227.3.peg.15666.
UCSCCG1976-RA. d. melanogaster.

Organism-specific databases

CTD43758.
FlyBaseFBgn0039883. RhoGAP100F.

Phylogenomic databases

eggNOGinNOG04730.
InParanoidQ9V9S7.
OMASSQHIGG.
OrthoDBEOG4DR7T8.
PhylomeDBQ9V9S7.

Gene expression databases

ArrayExpressQ9V9S7.
BgeeQ9V9S7.

Family and domain databases

InterProIPR000008. C2_Ca-dep.
IPR008973. C2_Ca/lipid-bd_dom_CaLB.
IPR001478. PDZ/DHR/GLGF.
IPR008936. Rho_GTPase_activation_prot.
IPR000198. RhoGAP_dom.
[Graphical view]
Gene3DG3DSA:1.10.555.10. RhoGAP. 1 hit.
PfamPF00595. PDZ. 1 hit.
PF00620. RhoGAP. 1 hit.
[Graphical view]
SMARTSM00239. C2. 1 hit.
SM00228. PDZ. 1 hit.
SM00324. RhoGAP. 1 hit.
[Graphical view]
SUPFAMSSF49562. C2_CaLB. 1 hit.
SSF50156. PDZ. 1 hit.
SSF48350. Rho_GAP. 1 hit.
PROSITEPS50004. C2. False negative.
PS50106. PDZ. 1 hit.
PS50238. RHOGAP. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio835643.

Entry information

Entry nameSYDE_DROME
AccessionPrimary (citable) accession number: Q9V9S7
Secondary accession number(s): C3KGQ2 expand/collapse secondary AC list , E1JJ30, E1JJ31, Q8SWW5
Entry history
Integrated into UniProtKB/Swiss-Prot: December 4, 2007
Last sequence update: September 21, 2011
Last modified: January 25, 2012
This is version 79 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programDrosophila annotation project

Relevant documents

Drosophila

Drosophila: entries, gene names and cross-references to FlyBase

SIMILARITY comments

Index of protein domains and families