Q9V9S7 (SYDE_DROME) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 79.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Rho GTPase-activating protein 100F Short name=RhoGAP-100F Alternative name(s): Synapse defective protein 1 homolog Short name=Protein syd-1 homolog | ||||
| Gene names |
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| Organism | Drosophila melanogaster (Fruit fly) | ||||
| Taxonomic identifier | 7227 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora |
Protein attributes
| Sequence length | 1866 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state By similarity. |
| Sequence similarities | Contains 1 C2 domain. Contains 1 PDZ (DHR) domain. Contains 1 Rho-GAP domain. |
| Sequence caution | The sequence AAM11366.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. |
Ontologies
| Keywords | |
|---|---|
| Coding sequence diversity | Alternative splicing |
| Molecular function | GTPase activation |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | activation of Rho GTPase activity Inferred from sequence or structural similarity. Source: UniProtKB signal transductionInferred from electronic annotation. Source: InterPro |
| Cellular component | intracellular Inferred from electronic annotation. Source: InterPro |
| Molecular function | Rho GTPase activator activity Inferred from sequence or structural similarity. Source: UniProtKB |
| Complete GO annotation... | |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform D (identifier: Q9V9S7-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform C (identifier: Q9V9S7-2) The sequence of this isoform differs from the canonical sequence as follows: 1-27: MQWKKKFTRLKAATGNSRVRRMLCCGR → MCDSATTGCFLTRSSH | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform B (identifier: Q9V9S7-3) The sequence of this isoform differs from the canonical sequence as follows: 1185-1191: RRGESTG → NVLPASD 1192-1866: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1866 | 1866 | Rho GTPase-activating protein 100F | PRO_0000312161 | |||||
Regions | |||||||||
| Domain | 179 – 264 | 86 | PDZ | ||||||
| Domain | 804 – 887 | 84 | C2 | ||||||
| Domain | 948 – 1148 | 201 | Rho-GAP | ||||||
| Compositional bias | 350 – 354 | 5 | Poly-Gly | ||||||
| Compositional bias | 366 – 370 | 5 | Poly-Pro | ||||||
| Compositional bias | 538 – 541 | 4 | Poly-Tyr | ||||||
| Compositional bias | 1399 – 1788 | 390 | Ser-rich | ||||||
Amino acid modifications | |||||||||
| Modified residue | 719 | 1 | Phosphoserine Ref.4 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 27 | 27 | MQWKK…LCCGR → MCDSATTGCFLTRSSH in isoform C. | VSP_041784 | |||||
| Alternative sequence | 1185 – 1191 | 7 | RRGESTG → NVLPASD in isoform B. | VSP_041785 | |||||
| Alternative sequence | 1192 – 1866 | 675 | Missing in isoform B. | VSP_041786 | |||||
Sequences
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References
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AE014297 Genomic DNA. Translation: AAF57207.2. AE014297 Genomic DNA. Translation: ACZ95078.1. AE014297 Genomic DNA. Translation: ACZ95079.1. BT082117 mRNA. Translation: ACQ45355.1. AY095038 mRNA. Translation: AAM11366.1. Different initiation. |
| RefSeq | NP_001163785.1. NM_001170314.1. NP_001163786.1. NM_001170315.1. NP_651902.2. NM_143645.2. |
| UniGene | Dm.12850. |
3D structure databases | |
| HSSP | HSSP built from PDB template 1B8Q based on UniProtKB P29476. |
| ProteinModelPortal | Q9V9S7. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q9V9S7. |
Proteomic databases | |
| PRIDE | Q9V9S7. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| GeneID | 43758. |
| KEGG | dme:Dmel_CG1976. |
| NMPDR | fig|7227.3.peg.15666. |
| UCSC | CG1976-RA. d. melanogaster. |
Organism-specific databases | |
| CTD | 43758. |
| FlyBase | FBgn0039883. RhoGAP100F. |
Phylogenomic databases | |
| eggNOG | inNOG04730. |
| InParanoid | Q9V9S7. |
| OMA | SSQHIGG. |
| OrthoDB | EOG4DR7T8. |
| PhylomeDB | Q9V9S7. |
Gene expression databases | |
| ArrayExpress | Q9V9S7. |
| Bgee | Q9V9S7. |
Family and domain databases | |
| InterPro | IPR000008. C2_Ca-dep. IPR008973. C2_Ca/lipid-bd_dom_CaLB. IPR001478. PDZ/DHR/GLGF. IPR008936. Rho_GTPase_activation_prot. IPR000198. RhoGAP_dom. [Graphical view] |
| Gene3D | G3DSA:1.10.555.10. RhoGAP. 1 hit. |
| Pfam | PF00595. PDZ. 1 hit. PF00620. RhoGAP. 1 hit. [Graphical view] |
| SMART | SM00239. C2. 1 hit. SM00228. PDZ. 1 hit. SM00324. RhoGAP. 1 hit. [Graphical view] |
| SUPFAM | SSF49562. C2_CaLB. 1 hit. SSF50156. PDZ. 1 hit. SSF48350. Rho_GAP. 1 hit. |
| PROSITE | PS50004. C2. False negative. PS50106. PDZ. 1 hit. PS50238. RHOGAP. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 835643. |
Entry information
| Entry name | SYDE_DROME | ||||||||
| Accession | Primary (citable) accession number: Q9V9S7 Secondary accession number(s): C3KGQ2 Q8SWW5 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Drosophila annotation project | ||||||||
Relevant documents
| Drosophila Drosophila: entries, gene names and cross-references to FlyBase |
| SIMILARITY comments Index of protein domains and families |

Clusters with