GlgA glycogen synthase - Pyrococcus abyssi (strain GE5 / Orsay)

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Q9V2J8 (Q9V2J8_PYRAB) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 63. History...

Clusters with 100%, 90%, 50% identity |

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Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
GlgA glycogen synthase EMBL CAB49000.1

Gene names

Ordered Locus Names:	PYRAB00770
ORF Names:	PAB2292 EMBL CAB49000.1

Organism

Pyrococcus abyssi (strain GE5 / Orsay) [Complete proteome] [HAMAP] EMBL CAB49000.1

Taxonomic identifier

Taxonomic lineage

Archaea › Euryarchaeota › Thermococci › Thermococcales › Thermococcaceae › Pyrococcus

Protein attributes

Sequence length	437 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 2BIS PDB 3FRO PDB 2BFW PDB 3L01 Complete proteome
Gene Ontology (GO)
Biological process	glucan biosynthetic process Inferred from electronic annotation. Source: InterPro
Molecular function	starch synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Regions

Region

2

Glucose binding PDB 2BIS

Sequences

Sequence

Length

Mass (Da)

Tools

Q9V2J8 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 9E09DB6B032D4D4F
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437

48,984

        10         20         30         40         50         60 
MKVLLLGFEF LPVKVGGLAE ALTAISEALA SLGHEVLVFT PSHGRFQGEE IGKIRVFGEE 

        70         80         90        100        110        120 
VQVKVSYEER GNLRIYRIGG GLLDSEDVYG PGWDGLIRKA VTFGRASVLL LNDLLREEPL 

       130        140        150        160        170        180 
PDVVHFHDWH TVFAGALIKK YFKIPAVFTI HRLNKSKLPA FYFHEAGLSE LAPYPDIDPE 

       190        200        210        220        230        240 
HTGGYIADIV TTVSRGYLID EWGFFRNFEG KITYVFNGID CSFWNESYLT GSRDERKKSL 

       250        260        270        280        290        300 
LSKFGMDEGV TFMFIGRFDR GQKGVDVLLK AIEILSSKKE FQEMRFIIIG KGDPELEGWA 

       310        320        330        340        350        360 
RSLEEKHGNV KVITEMLSRE FVRELYGSVD FVIIPSYFEP FGLVALEAMC LGAIPIASAV 

       370        380        390        400        410        420 
GGLRDIITNE TGILVKAGDP GELANAILKA LELSRSDLSK FRENCKKRAM SFSWEKSAER 

       430 
YVKAYTGSID RAFDFIL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi." Cohen G.N., Barbe V., Flament D., Galperin M., Heilig R., Lecompte O., Poch O., Prieur D., Querellou J., Ripp R., Thierry J.-C., Van der Oost J., Weissenbach J., Zivanovic Y., Forterre P. Mol. Microbiol. 47:1495-1512(2003) [PubMed: 12622808] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: GE5 / Orsay.
[2]	"Crystal structure of Pyrococcus abyssi glycogen synthase with open and closed conformations." Diaz A., Guivovart J.J., Fita I., Ferrer J.C. Submitted (JAN-2009) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.50 ANGSTROMS).
[3]	"Crystal structure of an archaeal glycogen synthase: insights into oligomerization and substrate binding of eukaryotic glycogen synthases." Horcajada C., Guinovart J.J., Fita I., Ferrer J.C. J. Biol. Chem. 281:2923-2931(2006) [PubMed: 16319074] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 217-413 IN COMPLEX WITH GLUCOSE.
[4]	"Crystal structure of monomeric glycogen synthase fron Pyrococcus abyssi." Diaz A., Martinez-Pons C., Fita I., Ferrer J.C., Guinovart J.J. Submitted (DEC-2009) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 1-425.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AJ248283 Genomic DNA. Translation: CAB49000.1.

PIR

RefSeq

NP_125769.1. NC_000868.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2BFW	X-ray	1.80	A	218-413	[»]
2BIS	X-ray	2.80	A/B/C	1-437	[»]
3FRO	X-ray	2.50	A/B/C	1-437	[»]
3L01	X-ray	2.60	A/B	1-425	[»]

ProteinModelPortal

SMR

Q9V2J8. Positions 1-437.

ModBase

Protein family/group databases

CAZy

GT5. Glycosyltransferase Family 5.

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

EBPYRT00000002464; EBPYRP00000002395; EBPYRG00000002464.

GeneID

GenomeReviews

Gene locus PYRAB00770 in contig AL096836_GR.

KEGG

NMPDR

fig|272844.1.peg.86.

Organism-specific databases

CMR

Phylogenomic databases

GeneTree

EBGT00050000022394.

HOGENOM

OMA

PhylomeDB

ProtClustDB

Enzyme and pathway databases

BioCyc

PABY272844:PAB2292-MONOMER.

Family and domain databases

InterPro

IPR001296. Glyco_trans_1.
IPR011835. Glycogen/starch_synth.
IPR013534. Starch_synth_cat_dom.
[Graphical view]

KO

Pfam

PF08323. Glyco_transf_5. 1 hit.
PF00534. Glycos_transf_1. 1 hit.
[Graphical view]

TIGRFAMs

TIGR02095. GlgA. 1 hit.

ProtoNet

Entry information

Entry name

Q9V2J8_PYRAB

Accession

Primary (citable) accession number: Q9V2J8

Entry history

Integrated into UniProtKB/TrEMBL:	May 1, 2000
Last sequence update:	May 1, 2000
Last modified:	December 14, 2011
This is version 63 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info