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Q9V2D8 (Q9V2D8_PYRAB) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 79. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:PAB0086 EMBL CAB49060.1, PYRAB01360 EMBL CAB49060.1
OrganismPyrococcus abyssi (strain GE5 / Orsay) [Complete proteome] [HAMAP] EMBL CAB49060.1
Taxonomic identifier272844 [NCBI]
Taxonomic lineageArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus

Protein attributes

Sequence length466 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequences

Sequence LengthMass (Da)Tools
Q9V2D8 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: E57A417C49BA19BD

FASTA46652,250
        10         20         30         40         50         60 
MINMTKWDEI KKYTSKKVDE NLKIVELDEE YLPRAIGFKY YPLVIERAKG SRVWDKDGNE 

        70         80         90        100        110        120 
YIDFLTSAAV FNVGHAHPKV VEAIKEQVDK FLNYTIGYLY TEPPVRLAEL LSEMTPGDFE 

       130        140        150        160        170        180 
KKVTFGFSGS DAVDSSIKAS RAYTKKVHII SFRHSYHGMT YGALSVTGIV DEKVKSIVQP 

       190        200        210        220        230        240 
MSNVHIVDYP DPYRNPWNID GYENPSELAN RALDEVEKKI KELNGDVAGI ILEPIQGDAG 

       250        260        270        280        290        300 
VVIPPLEFIK GLKKLTDEYG MVFIDEEVQT GMGRTGKWWA IEHFEVVPDL LVSAKALGGG 

       310        320        330        340        350        360 
MPISAVVGRA EIMDSVPSPL FVFTHVGHAV NASAAIATIK VIKEEKLVER AKELGDYALK 

       370        380        390        400        410        420 
RFRELQEEYP IIGDVRGKGL MIGVDIVKEG TKDPNRELAQ KICWRAWEKG LIIITFGKHG 

       430        440        450        460 
NVLRIAPPLT ISKEDFDRGI EIIEEAIKDA INGKVPDDVI KFLRAW 

« Hide

References

« Hide 'large scale' references
[1]Genoscope
Submitted (JUL-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Orsay EMBL CAB49060.1.
[2]"Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes."
Gaspin C., Cavaille J., Erauso G.
J. Mol. Biol. 297:895-906(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Orsay EMBL CAB49060.1.
[3]"Genome evolution at the genus level: comparison of three complete genomes of hyperthermophilic archaea."
Lecompte O., Ripp R., Puzos-Barbe V., Duprat S., Heilig R., Dietrich J., Thierry J.C., Poch O.
Genome Res. 11:981-993(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Orsay EMBL CAB49060.1.
[4]"An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi."
Cohen G.N., Barbe V., Flament D., Galperin M., Heilig R., Lecompte O., Poch O., Prieur D., Querellou J., Ripp R., Thierry J.-C., Van der Oost J., Weissenbach J., Zivanovic Y., Forterre P.
Mol. Microbiol. 47:1495-1512(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: GE5 / Orsay and Orsay EMBL CAB49060.1.
[5]"Re-annotation of two hyperthermophilic archaea Pyrococcus abyssi GE5 and Pyrococcus furiosus DSM 3638."
Gao J., Wang J.
Curr. Microbiol. 64:118-129(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: GE5 EMBL CCE69512.1 and GE5 / Orsay.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AJ248283 Genomic DNA. Translation: CAB49060.1.
HE613800 Genomic DNA. Translation: CCE69512.1.
PIRE75201.
RefSeqNP_125829.1. NC_000868.1.

3D structure databases

ProteinModelPortalQ9V2D8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING272844.PAB0086.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAB49060; CAB49060; PAB0086.
GeneID1495023.
KEGGpab:PAB0086.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0160.
HOGENOMHOG000020206.
KOK00823.
OMAFYSNAIQ.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 2 hits.
InterProIPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERPTHR11986. PTHR11986. 1 hit.
PfamPF00202. Aminotran_3. 1 hit.
[Graphical view]
PIRSFPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMSSF53383. SSF53383. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ9V2D8_PYRAB
AccessionPrimary (citable) accession number: Q9V2D8
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: June 11, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)