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Protein
Submitted name:

Pyridoxal phosphate-dependent aminotransferase

Gene

PAB0086

Organism
Pyrococcus abyssi (strain GE5 / Orsay)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

AminotransferaseImported, Transferase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Pyridoxal phosphate-dependent aminotransferaseImported
Gene namesi
Ordered Locus Names:PAB0086Imported
OrganismiPyrococcus abyssi (strain GE5 / Orsay)Imported
Taxonomic identifieri272844 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
ProteomesiUP000000810 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi272844.PAB0086.

Family & Domainsi

Sequence similaritiesi

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0160.
HOGENOMiHOG000020206.
KOiK00823.
OMAiEDERYFA.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 2 hits.
InterProiIPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9V2D8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MINMTKWDEI KKYTSKKVDE NLKIVELDEE YLPRAIGFKY YPLVIERAKG
60 70 80 90 100
SRVWDKDGNE YIDFLTSAAV FNVGHAHPKV VEAIKEQVDK FLNYTIGYLY
110 120 130 140 150
TEPPVRLAEL LSEMTPGDFE KKVTFGFSGS DAVDSSIKAS RAYTKKVHII
160 170 180 190 200
SFRHSYHGMT YGALSVTGIV DEKVKSIVQP MSNVHIVDYP DPYRNPWNID
210 220 230 240 250
GYENPSELAN RALDEVEKKI KELNGDVAGI ILEPIQGDAG VVIPPLEFIK
260 270 280 290 300
GLKKLTDEYG MVFIDEEVQT GMGRTGKWWA IEHFEVVPDL LVSAKALGGG
310 320 330 340 350
MPISAVVGRA EIMDSVPSPL FVFTHVGHAV NASAAIATIK VIKEEKLVER
360 370 380 390 400
AKELGDYALK RFRELQEEYP IIGDVRGKGL MIGVDIVKEG TKDPNRELAQ
410 420 430 440 450
KICWRAWEKG LIIITFGKHG NVLRIAPPLT ISKEDFDRGI EIIEEAIKDA
460
INGKVPDDVI KFLRAW
Length:466
Mass (Da):52,250
Last modified:May 1, 2000 - v1
Checksum:iE57A417C49BA19BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ248283 Genomic DNA. Translation: CAB49060.1.
HE613800 Genomic DNA. Translation: CCE69512.1.
PIRiE75201.
RefSeqiNP_125829.1. NC_000868.1.
WP_010867260.1. NC_000868.1.

Genome annotation databases

EnsemblBacteriaiCAB49060; CAB49060; PAB0086.
GeneIDi1495023.
KEGGipab:PAB0086.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ248283 Genomic DNA. Translation: CAB49060.1.
HE613800 Genomic DNA. Translation: CCE69512.1.
PIRiE75201.
RefSeqiNP_125829.1. NC_000868.1.
WP_010867260.1. NC_000868.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272844.PAB0086.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB49060; CAB49060; PAB0086.
GeneIDi1495023.
KEGGipab:PAB0086.

Phylogenomic databases

eggNOGiCOG0160.
HOGENOMiHOG000020206.
KOiK00823.
OMAiEDERYFA.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 2 hits.
InterProiIPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Genoscope
    Submitted (JUL-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: OrsayImported.
  2. "Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes."
    Gaspin C., Cavaille J., Erauso G.
    J. Mol. Biol. 297:895-906(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: OrsayImported.
  3. "Genome evolution at the genus level: comparison of three complete genomes of hyperthermophilic archaea."
    Lecompte O., Ripp R., Puzos-Barbe V., Duprat S., Heilig R., Dietrich J., Thierry J.C., Poch O.
    Genome Res. 11:981-993(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: OrsayImported.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: GE5 / OrsayImported and OrsayImported.
  5. "Re-annotation of two hyperthermophilic archaea Pyrococcus abyssi GE5 and Pyrococcus furiosus DSM 3638."
    Gao J., Wang J.
    Curr. Microbiol. 64:118-129(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: GE5Imported and GE5 / OrsayImported.

Entry informationi

Entry nameiQ9V2D8_PYRAB
AccessioniPrimary (citable) accession number: Q9V2D8
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: July 22, 2015
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.