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Q9V298

- AMYA_PYRAB

UniProt

Q9V298 - AMYA_PYRAB

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Protein

Alpha-amylase

Gene

amyA

Organism
Pyrococcus abyssi (strain GE5 / Orsay)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei123 – 1231NucleophileBy similarity
Active sitei214 – 2141Proton donorBy similarity

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. carbohydrate binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism

Protein family/group databases

CAZyiGH57. Glycoside Hydrolase Family 57.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylase (EC:3.2.1.1)
Gene namesi
Name:amyA
Ordered Locus Names:PYRAB01760
ORF Names:PAB0118
OrganismiPyrococcus abyssi (strain GE5 / Orsay)
Taxonomic identifieri272844 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
ProteomesiUP000000810: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 655655Alpha-amylasePRO_0000184572Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi272844.PAB0118.

Structurei

3D structure databases

ProteinModelPortaliQ9V298.
SMRiQ9V298. Positions 3-655.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 57 family.Curated

Phylogenomic databases

eggNOGiCOG1449.
HOGENOMiHOG000223207.
KOiK07405.
OMAiHYHEVPE.

Family and domain databases

Gene3Di2.70.98.10. 1 hit.
3.20.110.10. 2 hits.
InterProiIPR015179. A-amylase/a-glucTrfase_C.
IPR015178. A-amylase/a-glucTrfase_central.
IPR011013. Gal_mutarotase_SF_dom.
IPR014718. Glyco_hydro-type_carb-bd_sub.
IPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR027291. Glyco_hydro_38/57_N.
IPR028995. Glyco_hydro_57/38_cen.
IPR004300. Glyco_hydro_57_N.
[Graphical view]
PfamiPF09094. DUF1925. 1 hit.
PF09095. DUF1926. 1 hit.
PF03065. Glyco_hydro_57. 1 hit.
[Graphical view]
ProDomiPD014405. DUF1925. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF74650. SSF74650. 1 hit.
SSF88688. SSF88688. 1 hit.
SSF88713. SSF88713. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9V298-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPRINFIFGI HNHQPLGNFG WVMEEAYEKA YRPFLEILEE YPNMKVAIHI
60 70 80 90 100
SGILVEWLEE NKPDYIDLLK SLVRKGQVEI VVAGFYEPVL AAIPKEDRLE
110 120 130 140 150
QIYLLKEWAK KIGYDAKGLW LTERVWQPEL VKTLREAGIE YVVVDDYHFM
160 170 180 190 200
SAGLSKDQLF WPYYTEDGGE VITVFPIDEK LRYLIPFRPV DKVISYLHSL
210 220 230 240 250
ASEDESKVAV FHDDGEKFGI WPMTYEWVYE KGWLREFFDR VSSDEAINIM
260 270 280 290 300
LYSEYLQKFK PKGLVYLPIA SYFEMSEWSL PAQQAKLFVE FVEKLKELNM
310 320 330 340 350
FERYRVFVRG GIWKNFFYKY PEANYMHKRM LMLSRLLRDN PSARRFVLRA
360 370 380 390 400
QCNDAYWHGV FGGIYLPHLR RAIWSNLIKA HSHLEPKNKI LDVDFDGREE
410 420 430 440 450
VFLENDNFII VVKPHYGGSI FELSSKRRAV NYADVIARRW EHYHNLGESE
460 470 480 490 500
SDDNENQEGV SSIHEIGKRI PEDIRKELAY DRYRRGILQD HFFSANETLD
510 520 530 540 550
RYRLAKYWEL GDFIEGVYNY EVGNGLVLWR RGKVLNVTVD VKKSIEVRED
560 570 580 590 600
GFSVRYTVLS EEDIEALFGI ELNIAVHSIK ESPEELIGKR IKVNDKYGVG
610 620 630 640 650
EFEIVLNKKA RIWKYPVKTL SQSEAGWDYI QQGVSYTIIY PINGRLDIEL

YFREL
Length:655
Mass (Da):77,296
Last modified:May 1, 2000 - v1
Checksum:i7F6F920B1A00EECE
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ248283 Genomic DNA. Translation: CAB49100.1.
HE613800 Genomic DNA. Translation: CCE69552.1.
PIRiE75206.
RefSeqiNP_125869.1. NC_000868.1.
WP_010867300.1. NC_000868.1.

Genome annotation databases

EnsemblBacteriaiCAB49100; CAB49100; PAB0118.
GeneIDi1495063.
KEGGipab:PAB0118.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ248283 Genomic DNA. Translation: CAB49100.1 .
HE613800 Genomic DNA. Translation: CCE69552.1 .
PIRi E75206.
RefSeqi NP_125869.1. NC_000868.1.
WP_010867300.1. NC_000868.1.

3D structure databases

ProteinModelPortali Q9V298.
SMRi Q9V298. Positions 3-655.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 272844.PAB0118.

Protein family/group databases

CAZyi GH57. Glycoside Hydrolase Family 57.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAB49100 ; CAB49100 ; PAB0118 .
GeneIDi 1495063.
KEGGi pab:PAB0118.

Phylogenomic databases

eggNOGi COG1449.
HOGENOMi HOG000223207.
KOi K07405.
OMAi HYHEVPE.

Family and domain databases

Gene3Di 2.70.98.10. 1 hit.
3.20.110.10. 2 hits.
InterProi IPR015179. A-amylase/a-glucTrfase_C.
IPR015178. A-amylase/a-glucTrfase_central.
IPR011013. Gal_mutarotase_SF_dom.
IPR014718. Glyco_hydro-type_carb-bd_sub.
IPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR027291. Glyco_hydro_38/57_N.
IPR028995. Glyco_hydro_57/38_cen.
IPR004300. Glyco_hydro_57_N.
[Graphical view ]
Pfami PF09094. DUF1925. 1 hit.
PF09095. DUF1926. 1 hit.
PF03065. Glyco_hydro_57. 1 hit.
[Graphical view ]
ProDomi PD014405. DUF1925. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SUPFAMi SSF74650. SSF74650. 1 hit.
SSF88688. SSF88688. 1 hit.
SSF88713. SSF88713. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: GE5 / Orsay.
  2. "Re-annotation of two hyperthermophilic archaea Pyrococcus abyssi GE5 and Pyrococcus furiosus DSM 3638."
    Gao J., Wang J.
    Curr. Microbiol. 64:118-129(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: GE5 / Orsay.

Entry informationi

Entry nameiAMYA_PYRAB
AccessioniPrimary (citable) accession number: Q9V298
Secondary accession number(s): G8ZG11
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 21, 2001
Last sequence update: May 1, 2000
Last modified: October 29, 2014
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3