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Protein

30S ribosomal protein S4e

Gene

rps4e

Organism
Pyrococcus abyssi (strain GE5 / Orsay)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciPABY272844:G1GT8-357-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S4e
Gene namesi
Name:rps4e
Ordered Locus Names:PYRAB03290
ORF Names:PAB2397
OrganismiPyrococcus abyssi (strain GE5 / Orsay)
Taxonomic identifieri272844 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000810 Componenti: Chromosome
  • UP000009139 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001308571 – 24330S ribosomal protein S4eAdd BLAST243

Proteomic databases

PRIDEiQ9V1U8

Interactioni

Protein-protein interaction databases

STRINGi272844.PAB2397

Structurei

3D structure databases

SMRiQ9V1U8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini43 – 105S4 RNA-bindingAdd BLAST63

Sequence similaritiesi

Phylogenomic databases

eggNOGiarCOG04093 Archaea
COG1471 LUCA
HOGENOMiHOG000231324
KOiK02987
OMAiRKDYKFP
OrthoDBiPOG093Z0C23

Family and domain databases

CDDicd00165 S4, 1 hit
Gene3Di2.30.30.30, 1 hit
2.40.50.740, 1 hit
HAMAPiMF_00485 Ribosomal_S4e, 1 hit
InterProiView protein in InterPro
IPR005824 KOW
IPR014722 Rib_L2_dom2
IPR000876 Ribosomal_S4e
IPR013845 Ribosomal_S4e_central_region
IPR038237 Ribosomal_S4e_central_sf
IPR013843 Ribosomal_S4e_N
IPR018199 Ribosomal_S4e_N_CS
IPR002942 S4_RNA-bd
PANTHERiPTHR11581 PTHR11581, 1 hit
PfamiView protein in Pfam
PF00900 Ribosomal_S4e, 1 hit
PF08071 RS4NT, 1 hit
PF01479 S4, 1 hit
PIRSFiPIRSF002116 Ribosomal_S4, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD002667 Ribosomal_S4e_central, 1 hit
SMARTiView protein in SMART
SM00739 KOW, 1 hit
SM00363 S4, 1 hit
PROSITEiView protein in PROSITE
PS00528 RIBOSOMAL_S4E, 1 hit
PS50889 S4, 1 hit

Sequencei

Sequence statusi: Complete.

Q9V1U8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARKGPKRHL KRLAAPTSWY IERKAYKWAV RPRPGPHNMR TSIPLLYIVR
60 70 80 90 100
DYLGYAKTAR EARKILNEGK FLVDGRVRKD YKFPVGIMDV VSIPETGEHY
110 120 130 140 150
RVLPNRIGKL ILHPISEEEA NIKPLRIRNK RMVKGAKIQL NFHDGTNHLI
160 170 180 190 200
PLSEKDNYFT SYTVLMKVPE REILEVLPFE KGAYVFVTQG KNVARKGRIV
210 220 230 240
EIKKFPMGWP DVVTIEDEEG ELFDTLKEYA FVVGRDKPRI SLP
Length:243
Mass (Da):28,194
Last modified:May 1, 2000 - v1
Checksum:i4F8DC042FD7B583E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ248284 Genomic DNA Translation: CAB49251.1
HE613800 Genomic DNA Translation: CCE69706.1
PIRiD75146
RefSeqiWP_010867451.1, NC_000868.1

Genome annotation databases

EnsemblBacteriaiCAB49251; CAB49251; PAB2397
GeneIDi1495219
KEGGipab:PAB2397
PATRICifig|272844.11.peg.350

Similar proteinsi

Entry informationi

Entry nameiRS4E_PYRAB
AccessioniPrimary (citable) accession number: Q9V1U8
Secondary accession number(s): G8ZHW3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 16, 2001
Last sequence update: May 1, 2000
Last modified: May 23, 2018
This is version 103 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

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