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Protein

Uncharacterized HTH-type transcriptional regulator PYRAB04820

Gene

PYRAB04820

Organism
Pyrococcus abyssi (strain GE5 / Orsay)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi21 – 40H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciPABY272844:G1GT8-521-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator PYRAB04820
Gene namesi
Ordered Locus Names:PYRAB04820
ORF Names:PAB0322
OrganismiPyrococcus abyssi (strain GE5 / Orsay)
Taxonomic identifieri272844 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000810 Componenti: Chromosome
  • UP000009139 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001117731 – 147Uncharacterized HTH-type transcriptional regulator PYRAB04820Add BLAST147

Proteomic databases

PRIDEiQ9V1E5

Interactioni

Protein-protein interaction databases

STRINGi272844.PAB0322

Structurei

3D structure databases

ProteinModelPortaliQ9V1E5
SMRiQ9V1E5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini2 – 63HTH asnC-typePROSITE-ProRule annotationAdd BLAST62

Phylogenomic databases

eggNOGiarCOG01580 Archaea
COG1522 LUCA
HOGENOMiHOG000115326
OMAiYCEGAAP
OrthoDBiPOG093Z0D8J

Family and domain databases

CDDicd00090 HTH_ARSR, 1 hit
Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR011991 ArsR-like_HTH
IPR000485 AsnC-type_HTH_dom
IPR011008 Dimeric_a/b-barrel
IPR019888 Tscrpt_reg_AsnC-typ
IPR019887 Tscrpt_reg_AsnC/Lrp_C
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF01037 AsnC_trans_reg, 1 hit
PRINTSiPR00033 HTHASNC
SMARTiView protein in SMART
SM00344 HTH_ASNC, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
SSF54909 SSF54909, 1 hit
PROSITEiView protein in PROSITE
PS50956 HTH_ASNC_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q9V1E5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLDELDKKII GILMKDSRIS YREIAKELNV AVGTIYNRIK KLEESGVIQG
60 70 80 90 100
FTLKLNYENI GYDLTAIMGI KAQGKKIREI ERIIAKDKRV MCVYDVTGEY
110 120 130 140
DIIVIAKFKN REDMNRFVKG VLSIDGVEKT NTHVVLEVVK EDFRLEP
Length:147
Mass (Da):16,912
Last modified:May 1, 2000 - v1
Checksum:i65891CE45FB87DC7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ248284 Genomic DNA Translation: CAB49404.1
HE613800 Genomic DNA Translation: CCE69865.1
PIRiE75165
RefSeqiWP_010867606.1, NC_000868.1

Genome annotation databases

EnsemblBacteriaiCAB49404; CAB49404; PAB0322
GeneIDi1495378
KEGGipab:PAB0322
PATRICifig|272844.11.peg.509

Similar proteinsi

Entry informationi

Entry nameiREG8_PYRAB
AccessioniPrimary (citable) accession number: Q9V1E5
Secondary accession number(s): G8ZGI6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 26, 2001
Last sequence update: May 1, 2000
Last modified: March 28, 2018
This is version 106 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome
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Main funding by: National Institutes of Health