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Protein

UPF0173 metal-dependent hydrolase PYRAB05000

Gene

PYRAB05000

Organism
Pyrococcus abyssi (strain GE5 / Orsay)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0173 metal-dependent hydrolase PYRAB05000UniRule annotation
Gene namesi
Ordered Locus Names:PYRAB05000
ORF Names:PAB0339
OrganismiPyrococcus abyssi (strain GE5 / Orsay)
Taxonomic identifieri272844 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000810 Componenti: Chromosome
  • UP000009139 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 225225UPF0173 metal-dependent hydrolase PYRAB05000PRO_0000156398Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi272844.PAB0339.

Structurei

3D structure databases

ProteinModelPortaliQ9V1C7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0173 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG00497. Archaea.
COG2220. LUCA.
HOGENOMiHOG000223952.
OMAiIGMNIGG.

Family and domain databases

Gene3Di3.60.15.10. 1 hit.
HAMAPiMF_00457. UPF0173.
InterProiIPR001279. Metallo-B-lactamas.
IPR022877. UPF0173.
[Graphical view]
SMARTiSM00849. Lactamase_B. 1 hit.
[Graphical view]
SUPFAMiSSF56281. SSF56281. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9V1C7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKVKFLGHA AFYIEGSKKI LIDPFLTGNP QAVAKPEDFK DVDLILVTHA
60 70 80 90 100
HGDHIGDAGE IAKISGAKIV AMYDIANYIA EKFKGVETVG MNYGPTEVDG
110 120 130 140 150
VFIVQVPAWH SSSDGKYSIG NASGFIVKLD GKTIYHAGDT YVFKDMELFS
160 170 180 190 200
ELYGPIDVAL LPIGGHFTMG VKEAAKAVEL LKPRTVVPMH YNTWPPISAD
210 220
PEEFKKLVGD KAKVVVLKPG EELEL
Length:225
Mass (Da):24,475
Last modified:May 1, 2000 - v1
Checksum:iA41CC1041DB53CD6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ248284 Genomic DNA. Translation: CAB49422.1.
HE613800 Genomic DNA. Translation: CCE69889.1.
PIRiG75167.
RefSeqiWP_010867624.1. NC_000868.1.

Genome annotation databases

EnsemblBacteriaiCAB49422; CAB49422; PAB0339.
GeneIDi1495402.
KEGGipab:PAB0339.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ248284 Genomic DNA. Translation: CAB49422.1.
HE613800 Genomic DNA. Translation: CCE69889.1.
PIRiG75167.
RefSeqiWP_010867624.1. NC_000868.1.

3D structure databases

ProteinModelPortaliQ9V1C7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272844.PAB0339.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB49422; CAB49422; PAB0339.
GeneIDi1495402.
KEGGipab:PAB0339.

Phylogenomic databases

eggNOGiarCOG00497. Archaea.
COG2220. LUCA.
HOGENOMiHOG000223952.
OMAiIGMNIGG.

Family and domain databases

Gene3Di3.60.15.10. 1 hit.
HAMAPiMF_00457. UPF0173.
InterProiIPR001279. Metallo-B-lactamas.
IPR022877. UPF0173.
[Graphical view]
SMARTiSM00849. Lactamase_B. 1 hit.
[Graphical view]
SUPFAMiSSF56281. SSF56281. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: GE5 / Orsay.
  2. "Re-annotation of two hyperthermophilic archaea Pyrococcus abyssi GE5 and Pyrococcus furiosus DSM 3638."
    Gao J., Wang J.
    Curr. Microbiol. 64:118-129(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: GE5 / Orsay.

Entry informationi

Entry nameiY500_PYRAB
AccessioniPrimary (citable) accession number: Q9V1C7
Secondary accession number(s): G8ZGL0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 18, 2001
Last sequence update: May 1, 2000
Last modified: December 9, 2015
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.