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Protein

30S ribosomal protein S13

Gene

rps13

Organism
Pyrococcus abyssi (strain GE5 / Orsay)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S13UniRule annotation
Gene namesi
Name:rps13UniRule annotation
Ordered Locus Names:PYRAB05270
ORF Names:PAB0360
OrganismiPyrococcus abyssi (strain GE5 / Orsay)
Taxonomic identifieri272844 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000810 Componenti: Chromosome
  • UP000009139 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001321851 – 14830S ribosomal protein S13Add BLAST148

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.UniRule annotation

Protein-protein interaction databases

STRINGi272844.PAB0360.

Structurei

3D structure databases

ProteinModelPortaliQ9V1A0.
SMRiQ9V1A0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S13P family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG01722. Archaea.
COG0099. LUCA.
HOGENOMiHOG000039877.
KOiK02952.
OMAiRYANIVC.
OrthoDBiPOG093Z0FBQ.

Family and domain databases

Gene3Di4.10.910.10. 1 hit.
HAMAPiMF_01315. Ribosomal_S13_S18. 1 hit.
InterProiView protein in InterPro
IPR027437. 30s_Rbsml_prot_S13_C.
IPR001892. Ribosomal_S13.
IPR010979. Ribosomal_S13-like_H2TH.
IPR019977. Ribosomal_S13_archaeal.
IPR018269. Ribosomal_S13_CS.
PfamiView protein in Pfam
PF00416. Ribosomal_S13. 1 hit.
PIRSFiPIRSF002134. Ribosomal_S13. 1 hit.
SUPFAMiSSF46946. SSF46946. 1 hit.
TIGRFAMsiTIGR03629. uS13_arch. 1 hit.
PROSITEiView protein in PROSITE
PS00646. RIBOSOMAL_S13_1. 1 hit.
PS50159. RIBOSOMAL_S13_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9V1A0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADFRHIVRV AGVDLDGNKQ LRWALTAIKG VGINFATMVC RVAGLDPFMK
60 70 80 90 100
AGYLTDEQVK KIEEILQDPV AHGIPRWAVN RPKDYETGRD LHLITAKLDM
110 120 130 140
AIREDIMRLR RIRAYRGIRH ELGLPVRGQR TRSNFRRGQT VGVSRKKK
Length:148
Mass (Da):16,959
Last modified:May 1, 2000 - v1
Checksum:iE40AB97560689F25
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ248284 Genomic DNA. Translation: CAB49449.1.
HE613800 Genomic DNA. Translation: CCE69916.1.
PIRiB75171.
RefSeqiWP_010867651.1. NC_000868.1.

Genome annotation databases

EnsemblBacteriaiCAB49449; CAB49449; PAB0360.
GeneIDi1495429.
KEGGipab:PAB0360.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ248284 Genomic DNA. Translation: CAB49449.1.
HE613800 Genomic DNA. Translation: CCE69916.1.
PIRiB75171.
RefSeqiWP_010867651.1. NC_000868.1.

3D structure databases

ProteinModelPortaliQ9V1A0.
SMRiQ9V1A0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272844.PAB0360.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB49449; CAB49449; PAB0360.
GeneIDi1495429.
KEGGipab:PAB0360.

Phylogenomic databases

eggNOGiarCOG01722. Archaea.
COG0099. LUCA.
HOGENOMiHOG000039877.
KOiK02952.
OMAiRYANIVC.
OrthoDBiPOG093Z0FBQ.

Family and domain databases

Gene3Di4.10.910.10. 1 hit.
HAMAPiMF_01315. Ribosomal_S13_S18. 1 hit.
InterProiView protein in InterPro
IPR027437. 30s_Rbsml_prot_S13_C.
IPR001892. Ribosomal_S13.
IPR010979. Ribosomal_S13-like_H2TH.
IPR019977. Ribosomal_S13_archaeal.
IPR018269. Ribosomal_S13_CS.
PfamiView protein in Pfam
PF00416. Ribosomal_S13. 1 hit.
PIRSFiPIRSF002134. Ribosomal_S13. 1 hit.
SUPFAMiSSF46946. SSF46946. 1 hit.
TIGRFAMsiTIGR03629. uS13_arch. 1 hit.
PROSITEiView protein in PROSITE
PS00646. RIBOSOMAL_S13_1. 1 hit.
PS50159. RIBOSOMAL_S13_2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS13_PYRAB
AccessioniPrimary (citable) accession number: Q9V1A0
Secondary accession number(s): G8ZGN7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 27, 2003
Last sequence update: May 1, 2000
Last modified: March 15, 2017
This is version 90 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.