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Q9V114 (Q9V114_PYRAB) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA-directed RNA polymerase RuleBase RU004279
EC=2.7.7.6 RuleBase RU004279
Gene names
Name:rpoA1 EMBL CAB49537.1
Ordered Locus Names:PYRAB06150
ORF Names:PAB0424 EMBL CAB49537.1
OrganismPyrococcus abyssi (strain GE5 / Orsay) [Complete proteome] [HAMAP] EMBL CAB49537.1
Taxonomic identifier272844 [NCBI]
Taxonomic lineageArchaea › Euryarchaeota › Thermococci › Thermococcales › Thermococcaceae › Pyrococcus

Protein attributes

Sequence length907 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). RuleBase RU004279

Sequence similarities

Belongs to the RNA polymerase beta' chain family. RuleBase RU004279

Sequences

Sequence LengthMass (Da)Tools
Q9V114 [UniParc].

Last modified May 1, 2000. Version 1.
Checksum: 4A178CD24924FE0E

FASTA907103,057
        10         20         30         40         50         60 
MQSVKKVIGS IEFGILSPQE IRKMSAVEVT VPDTYDDDGY PIEGGVMDKR MGVIDPGLRC 

        70         80         90        100        110        120 
ETCGAKAGEC PGHFGHIELA RPVIHVGFAK TIHRILESTC RECGRIKLTD EEIEEYMKKL 

       130        140        150        160        170        180 
ELAKNRRSEV NKILKEIHKK ARERMVCPHC GAPQYPIKFE KPTIYWELRK DEQGNEYKHR 

       190        200        210        220        230        240 
MMPTEIRDRL EKIPDKDLPL LGLHPEKSRP EWMVLTVLPV PPVTARPSIT LETGIRAEDD 

       250        260        270        280        290        300 
LTHKLVDIIR INNRLKQNIE AGAPQLIIED LWDLLQYHVT TYINNETSGV PPAKHKSGRP 

       310        320        330        340        350        360 
LKTLAQRLKG KEGRFRGNLS GKRVNFSART VISPDPMISI NEVGVPIQIA MELTVPEKVT 

       370        380        390        400        410        420 
EFNIEKLRKM VLNGPDKYPG ANYVIDPEGR RIRIMESNRE NLARMIDIGW TVERHLLDGD 

       430        440        450        460        470        480 
IVLFNRQPSL HRMSIMAHRV RVMPYRTFRL NLAVCPPYNA DFDGDEMNLH VPQTEEAQAE 

       490        500        510        520        530        540 
ARILMEVQNH IISPRYGGPI IGGIQDHISG GYLLTREGAY FTREEVEQML MFAGVDIKEL 

       550        560        570        580        590        600 
PEPDKYENGK PLWSGKTIFS LLLPDDLTVW YRNKLCDEPE RCEALEKLIE EKLMPDPEEV 

       610        620        630        640        650        660 
RKLAYDGFVY IQNGKLLSGA IDKKAYGRED GIILDLIVRE YGVERARQFL DQVTKLTIWV 

       670        680        690        700        710        720 
ITHKGFTTGI DDEDLPEEAR DRIKEIIREA EERVQKLIEA YKRGELEPLP GKTLEETLES 

       730        740        750        760        770        780 
KIMAVLAEAR DNAGSIAEKY LGMDNHTVIM AKTGARGKIL NITQMAALLG QQSIRGKRLY 

       790        800        810        820        830        840 
RGFRGRVLSH FKPGDLGARA KGFVVNSYKS GLSPQEYFFH AMGGREGLVD TAVRTAQSGY 

       850        860        870        880        890        900 
MQRRLINALQ DLKVDYDGTV RDPTGVIVQF RYGEDGVDPM KSWGGKTVDV DRVIMRTLIK 


MRANNKG

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References

[1]"An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi."
Cohen G.N., Barbe V., Flament D., Galperin M., Heilig R., Lecompte O., Poch O., Prieur D., Querellou J., Ripp R., Thierry J.-C., Van der Oost J., Weissenbach J., Zivanovic Y., Forterre P.
Mol. Microbiol. 47:1495-1512(2003) [PubMed: 12622808] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: GE5 / Orsay.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AJ248284 Genomic DNA. Translation: CAB49537.1.
PIRB75182.
RefSeqNP_126306.1. NC_000868.1.

3D structure databases

HSSPHSSP built from PDB template 1I6H based on UniProtKB P04050.
ProteinModelPortalQ9V114.
SMRQ9V114. Positions 6-897.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBPYRT00000002171; EBPYRP00000002102; EBPYRG00000002171.
GeneID1495520.
GenomeReviewsGene locus PYRAB06150 in contig AL096836_GR.
KEGGpab:PAB0424.
NMPDRfig|272844.1.peg.644.

Organism-specific databases

CMRSearch...

Phylogenomic databases

GeneTreeEBGT00050000022344.
HOGENOMHBG499785.
OMAHKLVDII.
PhylomeDBQ9V114.
ProtClustDBPRK08566.

Enzyme and pathway databases

BioCycPABY272844:PAB0424-MONOMER.

Family and domain databases

InterProIPR012758. DNA-dir_RpoA1.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
KOK03041.
PfamPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsTIGR02390. RNA_pol_rpoA1. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ9V114_PYRAB
AccessionPrimary (citable) accession number: Q9V114
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: May 1, 2000
Last modified: December 14, 2011
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info