Q9V0Y8 (RUXX_PYRAB) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Putative snRNP Sm-like protein

Gene names

Ordered Locus Names:	PYRAB06500
ORF Names:	PAB8160

Organism

Pyrococcus abyssi (strain GE5 / Orsay) [Complete proteome] [HAMAP]

Taxonomic identifier

272844 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Thermococci › Thermococcales › Thermococcaceae › Pyrococcus

Protein attributes

Sequence length	75 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the snRNP Sm proteins family.

Ontologies

Keywords
Molecular function	Ribonucleoprotein
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
Cellular component	ribonucleoprotein complex Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 75

75

Putative snRNP Sm-like protein HAMAP MF_00257

PRO_0000125596

Secondary structure

1

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75

Helix Strand Turn

Details...

Helix

5 – 10

6

Turn

11 – 14

4

Beta strand

15 – 21

7

Beta strand

24 – 34

11

Beta strand

40 – 49

10

Beta strand

52 – 62

11

Helix

64 – 66

3

Beta strand

67 – 72

6

Sequences

	Sequence		Length	Mass (Da)
	Q9V0Y8 [UniParc]. Last modified May 1, 2000. Version 1. Checksum: CB08295C82D03F1E	FASTA	75	8,489
	10 20 30 40 50 60 MAERPLDVIH RSLDKDVLVI LKKGFEFRGR LIGYDIHLNV VLADAEMIQD GEVVKRYGKI 70 VIRGDNVLAI SPTEE

References

[1]

"An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi." Cohen G.N., Barbe V., Flament D., Galperin M., Heilig R., Lecompte O., Poch O., Prieur D., Querellou J., Ripp R., Thierry J.-C., Van der Oost J., Weissenbach J., Zivanovic Y., Forterre P. Mol. Microbiol. 47:1495-1512(2003) [PubMed: 12622808] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: GE5 / Orsay.

+

Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AJ248285 Genomic DNA. Translation: CAB49563.1.

PIR

B75106.

RefSeq

NP_126332.1. NC_000868.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1H64	X-ray	1.90	1/2/A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z	1-75	[»]
1M8V	X-ray	2.60	A/B/C/D/E/F/G/H/I/J/K/L/M/N	1-75	[»]

ProteinModelPortal

Q9V0Y8.

SMR

Q9V0Y8. Positions 2-73.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

EBPYRT00000003780; EBPYRP00000003711; EBPYRG00000003780.

GeneID

1495548.

GenomeReviews

Gene locus PYRAB06500 in contig AL096836_GR.

KEGG

pab:PAB8160.

NMPDR

fig|272844.1.peg.672.

Organism-specific databases

CMR

Search...

Phylogenomic databases

GeneTree

EBGT00050000022770.

HOGENOM

HBG749684.

OMA

GYDVHMN.

PhylomeDB

Q9V0Y8.

ProtClustDB

PRK00737.

Enzyme and pathway databases

BioCyc

PABY272844:PAB8160-MONOMER.

Family and domain databases

HAMAP

MF_00257. Lsm_RuxX.
[Tree]

InterPro

IPR010920. LSM-related_domain.
IPR001163. LSM_domain.
IPR006649. LSM_domain_euk/arc.
IPR022901. snRNP_Sm-like_arc.
[Graphical view]

KO

K04796.

Pfam

PF01423. LSM. 1 hit.
[Graphical view]

SMART

SM00651. Sm. 1 hit.
[Graphical view]

SUPFAM

SSF50182. Sm_like_riboprot. 1 hit.

ProtoNet

Search...

Entry information

Entry name

RUXX_PYRAB

Accession

Primary (citable) accession number: Q9V0Y8

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 1, 2000
Last sequence update:	May 1, 2000
Last modified:	December 14, 2011
This is version 72 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program