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Protein

50S ribosomal protein L39e

Gene

rpl39e

Organism
Pyrococcus abyssi (strain GE5 / Orsay)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L39e
Gene namesi
Name:rpl39e
Ordered Locus Names:PYRAB15190
ORF Names:PAB3384
OrganismiPyrococcus abyssi (strain GE5 / Orsay)
Taxonomic identifieri272844 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000810 Componenti: Chromosome
  • UP000009139 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001270561 – 5150S ribosomal protein L39eAdd BLAST51

Interactioni

Protein-protein interaction databases

STRINGi272844.PAB3384.

Structurei

3D structure databases

ProteinModelPortaliQ9UYI8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L39e family.Curated

Phylogenomic databases

eggNOGiarCOG04177. Archaea.
COG2167. LUCA.
HOGENOMiHOG000230627.
KOiK02924.
OMAiKMRYWRR.

Family and domain databases

Gene3Di1.10.1620.10. 1 hit.
HAMAPiMF_00629. Ribosomal_L39e. 1 hit.
InterProiIPR000077. Ribosomal_L39.
IPR020083. Ribosomal_L39_CS.
IPR023626. Ribosomal_L39e_dom.
[Graphical view]
PANTHERiPTHR19970. PTHR19970. 1 hit.
PfamiPF00832. Ribosomal_L39. 1 hit.
[Graphical view]
SUPFAMiSSF48662. SSF48662. 1 hit.
PROSITEiPS00051. RIBOSOMAL_L39E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9UYI8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARNKPLAKK LRLAKAMKQN RRVPVWVIVK TNRRVLTHPK RRHWRRTKLK

E
Length:51
Mass (Da):6,296
Last modified:May 1, 2000 - v1
Checksum:i4662B33EAAD553F3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ248287 Genomic DNA. Translation: CAB50424.1.
HE613800 Genomic DNA. Translation: CCE70973.1.
PIRiC75066.
RefSeqiWP_010868637.1. NC_000868.1.

Genome annotation databases

EnsemblBacteriaiCAB50424; CAB50424; PAB3384.
GeneIDi1495802.
KEGGipab:PAB3384.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ248287 Genomic DNA. Translation: CAB50424.1.
HE613800 Genomic DNA. Translation: CCE70973.1.
PIRiC75066.
RefSeqiWP_010868637.1. NC_000868.1.

3D structure databases

ProteinModelPortaliQ9UYI8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272844.PAB3384.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB50424; CAB50424; PAB3384.
GeneIDi1495802.
KEGGipab:PAB3384.

Phylogenomic databases

eggNOGiarCOG04177. Archaea.
COG2167. LUCA.
HOGENOMiHOG000230627.
KOiK02924.
OMAiKMRYWRR.

Family and domain databases

Gene3Di1.10.1620.10. 1 hit.
HAMAPiMF_00629. Ribosomal_L39e. 1 hit.
InterProiIPR000077. Ribosomal_L39.
IPR020083. Ribosomal_L39_CS.
IPR023626. Ribosomal_L39e_dom.
[Graphical view]
PANTHERiPTHR19970. PTHR19970. 1 hit.
PfamiPF00832. Ribosomal_L39. 1 hit.
[Graphical view]
SUPFAMiSSF48662. SSF48662. 1 hit.
PROSITEiPS00051. RIBOSOMAL_L39E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL39_PYRAB
AccessioniPrimary (citable) accession number: Q9UYI8
Secondary accession number(s): G8ZIU0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 27, 2001
Last sequence update: May 1, 2000
Last modified: November 30, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.