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Protein

60S ribosomal protein L42

Gene

rpl42

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-SPO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-SPO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-SPO-72689. Formation of a pool of free 40S subunits.
R-SPO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-SPO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-SPO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L42
Gene namesi
Name:rpl42
Synonyms:rpl36a
ORF Names:SPAC15E1.03
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC15E1.03.
PomBaseiSPAC15E1.03. rpl42.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: PomBase
  • cytosolic large ribosomal subunit Source: PomBase

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001491452 – 10660S ribosomal protein L42Add BLAST105

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei55N6-methyllysine; by set131 Publication1

Keywords - PTMi

Methylation

Proteomic databases

MaxQBiQ9UTI8.
PRIDEiQ9UTI8.

Interactioni

Subunit structurei

Component of the large ribosomal subunit.

Protein-protein interaction databases

BioGridi279238. 4 interactors.
MINTiMINT-4710579.
STRINGi4896.SPAC15E1.03.1.

Structurei

3D structure databases

ProteinModelPortaliQ9UTI8.
SMRiQ9UTI8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000224989.
InParanoidiQ9UTI8.
KOiK02929.
OMAiYGGFPRP.
OrthoDBiEOG092C5T6H.
PhylomeDBiQ9UTI8.

Family and domain databases

InterProiView protein in InterPro
IPR000552. Ribosomal_L44e.
IPR011332. Ribosomal_zn-bd.
PANTHERiPTHR10369. PTHR10369. 1 hit.
PfamiView protein in Pfam
PF00935. Ribosomal_L44. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD002841. Ribosomal_L44e. 1 hit.
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiView protein in PROSITE
PS01172. RIBOSOMAL_L44E. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9UTI8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVNIPKTRKT YCPGKNCRKH TVHRVTQYKK GPDSKLAQGK RRYDRKQSGF
60 70 80 90 100
GGQTKPVFHK KAKVTKKVVL RLECVSCKYK NQLVLKRCKH FELGGEKKTK

GAAIQF
Length:106
Mass (Da):12,206
Last modified:January 23, 2007 - v3
Checksum:i4AC751BEBC2D4869
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB52422.1.
PIRiT37718.
RefSeqiNP_594304.1. NM_001019727.2.

Genome annotation databases

EnsemblFungiiSPAC15E1.03.1; SPAC15E1.03.1:pep; SPAC15E1.03.
GeneIDi2542789.
KEGGispo:SPAC15E1.03.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL44_SCHPO
AccessioniPrimary (citable) accession number: Q9UTI8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 24, 2004
Last sequence update: January 23, 2007
Last modified: July 5, 2017
This is version 107 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families