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Protein

Zinc finger protein C25B8.19c

Gene

SPAC25B8.19c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri468 – 49528C2H2-type 1PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri496 – 52227C2H2-type 2PROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

  • cellular zinc ion homeostasis Source: PomBase
  • regulation of transcription from RNA polymerase II promoter in response to zinc ion starvation Source: PomBase
Complete GO annotation...

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger protein C25B8.19c
Gene namesi
ORF Names:SPAC25B8.19c, SPAC683.01c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC25B8.19c.
PomBaseiSPAC25B8.19c.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 522522Zinc finger protein C25B8.19cPRO_0000046867Add
BLAST

Proteomic databases

MaxQBiQ9UTA1.

Interactioni

Protein-protein interaction databases

BioGridi279188. 1 interaction.
MINTiMINT-4709936.

Structurei

3D structure databases

ProteinModelPortaliQ9UTA1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 2 C2H2-type zinc fingers.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri468 – 49528C2H2-type 1PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri496 – 52227C2H2-type 2PROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

InParanoidiQ9UTA1.
OMAiCEIMAST.
OrthoDBiEOG7ZD245.

Family and domain databases

Gene3Di3.30.160.60. 2 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 2 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 2 hits.
PS50157. ZINC_FINGER_C2H2_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9UTA1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSDNTPSIN RRNNENPPQS SLPTTSGIVY NMFPACPYPH VQNPAFHGSV
60 70 80 90 100
DVPQVAQKAF DPQAATVSES ANVSRPTPAP VPPAGNTNTP TTSNSNQNLE
110 120 130 140 150
NNVTSAASMP AILNAAGQLE FSPSTNNALC CCTTVHGHPH MPPNLLAASS
160 170 180 190 200
ARLRLPPIST ILGGTFADPT FLAAAAAAAV PHYAHATTGS ATDASNTSNG
210 220 230 240 250
NSNPAAVPAG FLSGYSPLSY AYFVAKANEL ALANQRQSSE AAEQPSSKNN
260 270 280 290 300
TSGANPPSSN NQEVTSAPIP AAPIVLPFQQ PFYPIVCPGC AQGALPQHIP
310 320 330 340 350
VPHNTEFAQY QPSSRDLQNH PTVDESRLSS VAPPASNTLN HANGNQAENA
360 370 380 390 400
SESSTSQSND SQGPANTSYP VSVPLPNDAE NNHTLSRNPY IPSLNFKDNM
410 420 430 440 450
SAELSVVATL ASNSAQAHPM GQQSDSNYSD HHNNDKRAHV SRRHSTSRKI
460 470 480 490 500
AQSHTGSSST SSAANVRYRC TECLQGFSRP SSLKIHTYSH TGERPFVCDY
510 520
AGCGKAFNVR SNMRRHQRIH GL
Length:522
Mass (Da):55,066
Last modified:May 23, 2003 - v2
Checksum:iD145254CE0666353
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB61785.1.
PIRiT50206.
RefSeqiNP_594479.2. NM_001019908.2.

Genome annotation databases

EnsemblFungiiSPAC25B8.19c.1; SPAC25B8.19c.1:pep; SPAC25B8.19c.
GeneIDi2542738.
KEGGispo:SPAC25B8.19c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA. Translation: CAB61785.1.
PIRiT50206.
RefSeqiNP_594479.2. NM_001019908.2.

3D structure databases

ProteinModelPortaliQ9UTA1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi279188. 1 interaction.
MINTiMINT-4709936.

Proteomic databases

MaxQBiQ9UTA1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPAC25B8.19c.1; SPAC25B8.19c.1:pep; SPAC25B8.19c.
GeneIDi2542738.
KEGGispo:SPAC25B8.19c.

Organism-specific databases

EuPathDBiFungiDB:SPAC25B8.19c.
PomBaseiSPAC25B8.19c.

Phylogenomic databases

InParanoidiQ9UTA1.
OMAiCEIMAST.
OrthoDBiEOG7ZD245.

Miscellaneous databases

PROiQ9UTA1.

Family and domain databases

Gene3Di3.30.160.60. 2 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 2 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 2 hits.
PS50157. ZINC_FINGER_C2H2_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.

Entry informationi

Entry nameiYL8J_SCHPO
AccessioniPrimary (citable) accession number: Q9UTA1
Secondary accession number(s): Q9HFF3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 23, 2003
Last sequence update: May 23, 2003
Last modified: July 6, 2016
This is version 88 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.