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Protein

Transport protein particle 20 kDa subunit

Gene

trs20

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Component of the TRAPP I and TRAPP II complexes. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II seems to play a role in intra-Golgi transport (By similarity).By similarity

GO - Biological processi

Keywordsi

Biological processER-Golgi transport, Transport

Enzyme and pathway databases

ReactomeiR-SPO-204005 COPII (Coat Protein 2) Mediated Vesicle Transport
R-SPO-8876198 RAB GEFs exchange GTP for GDP on RABs

Names & Taxonomyi

Protein namesi
Recommended name:
Transport protein particle 20 kDa subunit
Short name:
TRAPP 20 kDa subunit
Gene namesi
Name:trs20
ORF Names:SPBC11G11.04
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC11G11.04
PomBaseiSPBC11G11.04 trs20

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Endoplasmic reticulum, Golgi apparatus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003724191 – 136Transport protein particle 20 kDa subunitAdd BLAST136

Proteomic databases

MaxQBiQ9USZ5
PaxDbiQ9USZ5
PRIDEiQ9USZ5

Interactioni

Protein-protein interaction databases

BioGridi276382, 2 interactors
STRINGi4896.SPBC11G11.04.1

Structurei

3D structure databases

ProteinModelPortaliQ9USZ5
SMRiQ9USZ5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000214139
InParanoidiQ9USZ5
KOiK20301
OMAiDKFNQWF
OrthoDBiEOG092C5M89
PhylomeDBiQ9USZ5

Family and domain databases

InterProiView protein in InterPro
IPR011012 Longin-like_dom_sf
IPR006722 Sedlin
IPR007233 TRAPPC
PANTHERiPTHR12403 PTHR12403, 1 hit
PfamiView protein in Pfam
PF04628 Sedlin_N, 1 hit
SMARTiView protein in SMART
SM01399 Sybindin, 1 hit
SUPFAMiSSF64356 SSF64356, 1 hit

Sequencei

Sequence statusi: Complete.

Q9USZ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTAYAAIIGT KDNPVYELEM GPINEKLDRS LNSHLNQFIV HSSLDIVDQL
60 70 80 90 100
QWTSNAFYMK TIDQFHEMYI SAYVTPSNMR FMLLHQNQSA DNIKLFFQEL
110 120 130
HELYIKTLMS PFYQPNQPIR SQAFDLKVRS IARRYL
Length:136
Mass (Da):16,040
Last modified:May 1, 2000 - v1
Checksum:i6EED20E553992736
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA Translation: CAB59806.1
PIRiT39331
RefSeqiNP_595722.1, NM_001021620.2

Genome annotation databases

EnsemblFungiiSPBC11G11.04.1; SPBC11G11.04.1:pep; SPBC11G11.04
GeneIDi2539833
KEGGispo:SPBC11G11.04

Similar proteinsi

Entry informationi

Entry nameiTRS20_SCHPO
AccessioniPrimary (citable) accession number: Q9USZ5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 5, 2009
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 100 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health