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Protein

Transport protein particle 20 kDa subunit

Gene

trs20

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Component of the TRAPP I and TRAPP II complexes. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II seems to play a role in intra-Golgi transport (By similarity).By similarity

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

ER-Golgi transport, Transport

Enzyme and pathway databases

ReactomeiR-SPO-204005. COPII (Coat Protein 2) Mediated Vesicle Transport.

Names & Taxonomyi

Protein namesi
Recommended name:
Transport protein particle 20 kDa subunit
Short name:
TRAPP 20 kDa subunit
Gene namesi
Name:trs20
ORF Names:SPBC11G11.04
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC11G11.04.
PomBaseiSPBC11G11.04. trs20.

Subcellular locationi

GO - Cellular componenti

  • cis-Golgi network Source: PomBase
  • cytosol Source: PomBase
  • endoplasmic reticulum Source: UniProtKB-SubCell
  • Golgi apparatus Source: UniProtKB-SubCell
  • nucleus Source: PomBase
  • TRAPP complex Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Endoplasmic reticulum, Golgi apparatus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 136136Transport protein particle 20 kDa subunitPRO_0000372419Add
BLAST

Proteomic databases

MaxQBiQ9USZ5.

Interactioni

Protein-protein interaction databases

BioGridi276382. 2 interactions.
MINTiMINT-4709192.

Structurei

3D structure databases

ProteinModelPortaliQ9USZ5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000214139.
InParanoidiQ9USZ5.
OMAiSCFVTGG.
OrthoDBiEOG722JN6.
PhylomeDBiQ9USZ5.

Family and domain databases

InterProiIPR011012. Longin-like_dom.
IPR006722. Sedlin.
IPR007233. TRAPPC.
[Graphical view]
PANTHERiPTHR12403. PTHR12403. 1 hit.
PfamiPF04628. Sedlin_N. 1 hit.
[Graphical view]
SMARTiSM01399. Sybindin. 1 hit.
[Graphical view]
SUPFAMiSSF64356. SSF64356. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9USZ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTAYAAIIGT KDNPVYELEM GPINEKLDRS LNSHLNQFIV HSSLDIVDQL
60 70 80 90 100
QWTSNAFYMK TIDQFHEMYI SAYVTPSNMR FMLLHQNQSA DNIKLFFQEL
110 120 130
HELYIKTLMS PFYQPNQPIR SQAFDLKVRS IARRYL
Length:136
Mass (Da):16,040
Last modified:May 1, 2000 - v1
Checksum:i6EED20E553992736
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAB59806.1.
PIRiT39331.
RefSeqiNP_595722.1. NM_001021620.2.

Genome annotation databases

EnsemblFungiiSPBC11G11.04.1; SPBC11G11.04.1:pep; SPBC11G11.04.
GeneIDi2539833.
KEGGispo:SPBC11G11.04.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAB59806.1.
PIRiT39331.
RefSeqiNP_595722.1. NM_001021620.2.

3D structure databases

ProteinModelPortaliQ9USZ5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi276382. 2 interactions.
MINTiMINT-4709192.

Proteomic databases

MaxQBiQ9USZ5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPBC11G11.04.1; SPBC11G11.04.1:pep; SPBC11G11.04.
GeneIDi2539833.
KEGGispo:SPBC11G11.04.

Organism-specific databases

EuPathDBiFungiDB:SPBC11G11.04.
PomBaseiSPBC11G11.04. trs20.

Phylogenomic databases

HOGENOMiHOG000214139.
InParanoidiQ9USZ5.
OMAiSCFVTGG.
OrthoDBiEOG722JN6.
PhylomeDBiQ9USZ5.

Enzyme and pathway databases

ReactomeiR-SPO-204005. COPII (Coat Protein 2) Mediated Vesicle Transport.

Miscellaneous databases

NextBioi20800981.
PROiQ9USZ5.

Family and domain databases

InterProiIPR011012. Longin-like_dom.
IPR006722. Sedlin.
IPR007233. TRAPPC.
[Graphical view]
PANTHERiPTHR12403. PTHR12403. 1 hit.
PfamiPF04628. Sedlin_N. 1 hit.
[Graphical view]
SMARTiSM01399. Sybindin. 1 hit.
[Graphical view]
SUPFAMiSSF64356. SSF64356. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  2. "ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
    Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
    Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiTRS20_SCHPO
AccessioniPrimary (citable) accession number: Q9USZ5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 5, 2009
Last sequence update: May 1, 2000
Last modified: May 11, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.