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Protein

40S ribosomal protein S4-B

Gene

rps402

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiR-SPO-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-SPO-1799339 SRP-dependent cotranslational protein targeting to membrane
R-SPO-72649 Translation initiation complex formation
R-SPO-72689 Formation of a pool of free 40S subunits
R-SPO-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-SPO-72702 Ribosomal scanning and start codon recognition
R-SPO-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-SPO-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-SPO-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S4-B
Gene namesi
Name:rps402
Synonyms:rps4b
ORF Names:SPBC21B10.10
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC21B10.10
PomBaseiSPBC21B10.10 rps402

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001308401 – 26240S ribosomal protein S4-BAdd BLAST262

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei223Phosphoserine1 Publication1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ9USW5
PaxDbiQ9USW5
PRIDEiQ9USW5

PTM databases

iPTMnetiQ9USW5

Interactioni

Protein-protein interaction databases

BioGridi27685530 interactors.
STRINGi4896.SPBC21B10.10.1

Structurei

3D structure databases

SMRiQ9USW5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini42 – 105S4 RNA-bindingAdd BLAST64

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000231325
InParanoidiQ9USW5
KOiK02987
OMAiVHKEKHK
OrthoDBiEOG092C443N
PhylomeDBiQ9USW5

Family and domain databases

CDDicd00165 S4, 1 hit
Gene3Di2.30.30.301 hit
2.40.50.7401 hit
HAMAPiMF_00485 Ribosomal_S4e, 1 hit
InterProiView protein in InterPro
IPR032277 40S_S4_C
IPR014722 Rib_L2_dom2
IPR000876 Ribosomal_S4e
IPR013845 Ribosomal_S4e_central_region
IPR038237 Ribosomal_S4e_central_sf
IPR013843 Ribosomal_S4e_N
IPR018199 Ribosomal_S4e_N_CS
IPR002942 S4_RNA-bd
PANTHERiPTHR11581 PTHR11581, 1 hit
PfamiView protein in Pfam
PF16121 40S_S4_C, 1 hit
PF00900 Ribosomal_S4e, 1 hit
PF08071 RS4NT, 1 hit
PF01479 S4, 1 hit
PIRSFiPIRSF002116 Ribosomal_S4, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD002667 Ribosomal_S4e_central, 1 hit
SMARTiView protein in SMART
SM00363 S4, 1 hit
PROSITEiView protein in PROSITE
PS00528 RIBOSOMAL_S4E, 1 hit
PS50889 S4, 1 hit

Sequencei

Sequence statusi: Complete.

Q9USW5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVRGPKKHLK RVAAPHHWLL DKLSGTYAPK PSPGPHKARE CLPLIVFLRN
60 70 80 90 100
RLKYALNGRE VKAILMQRLI QVDGKVRTDS TFPTGFMDVI SVEKTGEHFR
110 120 130 140 150
LVYDIKGRFT VHRITAEEAK YKLCKVKRVQ LGAKGVPFLV THDGRTIRYP
160 170 180 190 200
DPLIKVNDTI KLNLETNKIE SFIKFDTSAQ VMVTGGRNMG RVGTIVHREH
210 220 230 240 250
HLGSFEIIHV KDALDREFAT RLSNVFVIGE AGKSWISLPK GKGVKLSITE
260
ERDRRRALKG LA
Length:262
Mass (Da):29,659
Last modified:May 1, 2000 - v1
Checksum:i1AEECB2AECE5223A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA Translation: CAB57920.1
PIRiT39917
RefSeqiNP_595677.1, NM_001021572.2

Genome annotation databases

EnsemblFungiiSPBC21B10.10.1; SPBC21B10.10.1:pep; SPBC21B10.10
GeneIDi2540325
KEGGispo:SPBC21B10.10

Similar proteinsi

Entry informationi

Entry nameiRS4B_SCHPO
AccessioniPrimary (citable) accession number: Q9USW5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 28, 2002
Last sequence update: May 1, 2000
Last modified: March 28, 2018
This is version 123 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome