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Protein

Probable glycosidase C21B10.07

Gene

SPBC21B10.07

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei237 – 2371NucleophileBy similarity
Active sitei242 – 2421Proton donorBy similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Protein family/group databases

CAZyiGH16. Glycoside Hydrolase Family 16.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable glycosidase C21B10.07 (EC:3.2.1.-)
Gene namesi
ORF Names:SPBC21B10.07
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC21B10.07.
PomBaseiSPBC21B10.07.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei88 – 10821HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 419419Probable glycosidase C21B10.07PRO_0000314117Add
BLAST

Proteomic databases

MaxQBiQ9USW3.

Interactioni

Protein-protein interaction databases

BioGridi276863. 30 interactions.

Structurei

3D structure databases

ProteinModelPortaliQ9USW3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini122 – 387266GH16PROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi62 – 687Poly-Asn

Sequence similaritiesi

Belongs to the glycosyl hydrolase 16 family.Curated
Contains 1 GH16 (glycosyl hydrolase family 16) domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000161125.
InParanoidiQ9USW3.
OMAiGCEMEDI.
OrthoDBiEOG7HB5KN.
PhylomeDBiQ9USW3.

Family and domain databases

Gene3Di2.60.120.200. 1 hit.
InterProiIPR013320. ConA-like_dom.
IPR000757. GH16.
[Graphical view]
PfamiPF00722. Glyco_hydro_16. 1 hit.
[Graphical view]
SUPFAMiSSF49899. SSF49899. 2 hits.
PROSITEiPS51762. GH16_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9USW3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGIPDSTTDS RHSLSSAALS SASFENIYDP ARKNESTNDV IDNHTDTEID
60 70 80 90 100
DHDNDHENLD SNNNNENNEA FNEKAAEKKL LPWYRRYFIW ILIFIVALIC
110 120 130 140 150
SVLIGVLGGV LGHRTAVRDR HPSYKAKTYS LVKEYKGTTF FDGFDFMNIT
160 170 180 190 200
DPTHGFVQYL DRNSSAKLGL ISANSSNVIM AADSKHNYSS GRPSIRLQST
210 220 230 240 250
QYFEHGLFIL DLIHLPYGCG TWPAFWTLGD DWPNGGEIDI VEGVNVGTSN
260 270 280 290 300
QVTLHTGDGC EMEDIKRVMT GTALQTNCWV DAPNSYNAGC GVENPSGPSY
310 320 330 340 350
GEAFNKNGGG VFVLDWRSEG IRSWFFNRSE IPSDITSGSP QPAKWSEPVA
360 370 380 390 400
DFPDTKCDID KMFSKQKILF DLTFCGDWAG SSVYSSAGCP GSCNDFVGNN
410
PHNFTEAYWN IKSLAVYQY
Length:419
Mass (Da):46,508
Last modified:May 1, 2000 - v1
Checksum:iAB1AD1E14D171FBE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAB57923.1.
PIRiT39920.
RefSeqiNP_595680.1. NM_001021575.2.

Genome annotation databases

EnsemblFungiiSPBC21B10.07.1; SPBC21B10.07.1:pep; SPBC21B10.07.
GeneIDi2540333.
KEGGispo:SPBC21B10.07.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAB57923.1.
PIRiT39920.
RefSeqiNP_595680.1. NM_001021575.2.

3D structure databases

ProteinModelPortaliQ9USW3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi276863. 30 interactions.

Protein family/group databases

CAZyiGH16. Glycoside Hydrolase Family 16.

Proteomic databases

MaxQBiQ9USW3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPBC21B10.07.1; SPBC21B10.07.1:pep; SPBC21B10.07.
GeneIDi2540333.
KEGGispo:SPBC21B10.07.

Organism-specific databases

EuPathDBiFungiDB:SPBC21B10.07.
PomBaseiSPBC21B10.07.

Phylogenomic databases

HOGENOMiHOG000161125.
InParanoidiQ9USW3.
OMAiGCEMEDI.
OrthoDBiEOG7HB5KN.
PhylomeDBiQ9USW3.

Miscellaneous databases

NextBioi20801462.
PROiQ9USW3.

Family and domain databases

Gene3Di2.60.120.200. 1 hit.
InterProiIPR013320. ConA-like_dom.
IPR000757. GH16.
[Graphical view]
PfamiPF00722. Glyco_hydro_16. 1 hit.
[Graphical view]
SUPFAMiSSF49899. SSF49899. 2 hits.
PROSITEiPS51762. GH16_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.

Entry informationi

Entry nameiYHZ7_SCHPO
AccessioniPrimary (citable) accession number: Q9USW3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: May 1, 2000
Last modified: March 16, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.