Q9UQB3 (CTND2_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
December 14, 2011.
Version 102.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Catenin delta-2 Alternative name(s): Delta-catenin GT24 Neural plakophilin-related ARM-repeat protein Short name=NPRAP Neurojungin | ||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1225 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Functions as a transcriptional activator when bound to ZBTB33 By similarity. May be involved in neuronal cell adhesion and tissue morphogenesis and integrity by regulating adhesion molecules. Ref.2 |
| Subunit structure | Binds to E-cadherin at a juxtamembrane site within the cytoplasmic domain. Interacts with PDZD2. Interacts with ZBTB33 By similarity. Binds to PSEN1. Interacts with RGNEF. Interacts (via the extreme C-terminus) with FRMPD2 (via the PDZ 2 domain). Ref.1 Ref.3 Ref.7 Ref.12 Ref.14 Ref.15 |
| Subcellular location | Nucleus By similarity. Cell junction › adherens junction By similarity. Perikaryon. Note: Co-localizes with CDK5 in the cell body of neuronal cells. |
| Tissue specificity | Predominantly expressed in brain; accumulates in cortical neurons (at protein level). Ref.12 |
| Post-translational modification | O-glycosylated By similarity. Phosphorylated upon DNA damage, probably by ATM or ATR. Phosphorylated by CDK5. Ref.12 Ref.13 |
| Sequence similarities | Belongs to the beta-catenin family. Contains 9 ARM repeats. |
| Sequence caution | The sequence AAB68599.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence AAB88185.1 differs from that shown. Reason: Frameshift at position 913. |
Ontologies
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] Note: Additional isoforms seem to exist. | ||||||
| Isoform 1 (identifier: Q9UQB3-1) Also known as: NPRAPa; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9UQB3-2) Also known as: NPRAPc; The sequence of this isoform differs from the canonical sequence as follows: 823-880: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1225 | 1225 | Catenin delta-2 | PRO_0000064299 | |||||
Regions | |||||||||
| Repeat | 394 – 438 | 45 | ARM 1 | ||||||
| Repeat | 540 – 579 | 40 | ARM 2 | ||||||
| Repeat | 582 – 621 | 40 | ARM 3 | ||||||
| Repeat | 626 – 666 | 41 | ARM 4 | ||||||
| Repeat | 682 – 724 | 43 | ARM 5 | ||||||
| Repeat | 728 – 773 | 46 | ARM 6 | ||||||
| Repeat | 835 – 875 | 41 | ARM 7 | ||||||
| Repeat | 882 – 921 | 40 | ARM 8 | ||||||
| Repeat | 975 – 1018 | 44 | ARM 9 | ||||||
| Coiled coil | 49 – 84 | 36 | Potential | ||||||
| Compositional bias | 216 – 226 | 11 | Poly-Pro | ||||||
| Compositional bias | 811 – 817 | 7 | Poly-Lys | ||||||
Amino acid modifications | |||||||||
| Modified residue | 32 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 267 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 276 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 415 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 474 | 1 | Phosphoserine Ref.13 | ||||||
| Modified residue | 516 | 1 | Phosphotyrosine By similarity | ||||||
| Modified residue | 534 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 537 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1072 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1076 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1127 | 1 | Phosphoserine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 823 – 880 | 58 | Missing in isoform 2. | VSP_006746 | |||||
| Natural variant | 275 | 1 | G → C. Ref.4 | VAR_062270 | |||||
| Natural variant | 482 | 1 | A → T. Ref.4 | VAR_062271 | |||||
| Natural variant | 810 | 1 | G → R. Ref.4 | VAR_062272 | |||||
| Natural variant | 1159 | 1 | P → S in a colorectal cancer sample; somatic mutation. Ref.16 | VAR_036162 | |||||
Experimental info | |||||||||
| Sequence conflict | 426 | 1 | D → V in AAC63103. Ref.1 | ||||||
| Sequence conflict | 443 | 1 | D → V in AAC63103. Ref.1 | ||||||
| Sequence conflict | 725 | 1 | A → P in AAC63103. Ref.1 | ||||||
| Sequence conflict | 894 | 1 | L → R in AAC63103. Ref.1 | ||||||
| Sequence conflict | 894 | 1 | L → R in AAB96357. Ref.11 | ||||||
| Sequence conflict | 909 | 1 | V → A in AAC63103. Ref.1 | ||||||
| Sequence conflict | 909 | 1 | V → A in AAB96357. Ref.11 | ||||||
| Sequence conflict | 980 | 1 | A → G in AAB97957. Ref.8 | ||||||
| Sequence conflict | 1102 | 1 | A → G in AAD00453. Ref.7 | ||||||
| Sequence conflict | 1102 | 1 | A → G in AAB68599. Ref.9 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Presenilin 1 interaction in the brain with a novel member of the Armadillo family." Zhou J., Liyanage U., Medina M., Ho C., Simmons A.D., Lovett M., Kosik K.S. NeuroReport 8:2085-2090(1997) [PubMed: 9223106] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), INTERACTION WITH PSEN1. |
| [2] | "Delta-catenin, an adhesive junction-associated protein which promotes cell scattering." Lu Q., Paredes M., Medina M., Zhou J., Cavallo R., Peifer M., Orecchio L., Kosik K.S. J. Cell Biol. 144:519-532(1999) [PubMed: 9971746] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION. Tissue: Brain. |
| [3] | "Isolation of human delta-catenin and its binding specificity with presenilin 1." Tanahashi H., Tabira T. NeuroReport 10:563-568(1999) [PubMed: 10208590] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), INTERACTION WITH PSEN1. Tissue: Fetal brain. |
| [4] | NIEHS SNPs program Submitted (DEC-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANTS CYS-275; THR-482 AND ARG-810. |
| [5] | "The DNA sequence and comparative analysis of human chromosome 5." Schmutz J., Martin J., Terry A., Couronne O., Grimwood J., Lowry S., Gordon L.A., Scott D., Xie G., Huang W., Hellsten U., Tran-Gyamfi M., She X., Prabhakar S., Aerts A., Altherr M., Bajorek E., Black S. Rubin E.M.Nature 431:268-274(2004) [PubMed: 15372022] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | "Presenilins interact with armadillo proteins including neural-specific plakophilin-related protein and beta-catenin." Levesque G., Yu G., Nishimura M., Zhang D.M., Levesque L., Yu H., Xu D., Liang Y., Rogaeva E.A., Ikeda M., Duthie M., Murgolo N., Wang L., VanderVere P., Bayne M.L., Strader C.D., Rommens J.M., Fraser P.E., St George-Hyslop P.H. J. Neurochem. 72:999-1008(1999) [PubMed: 10037471] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 186-1225 (ISOFORM 1), INTERACTION WITH PSEN1. Tissue: Brain. |
| [8] | "Identification and localization of a neurally expressed member of the plakoglobin/armadillo multigene family." Paffenholz R., Franke W.W. Differentiation 61:293-304(1997) [PubMed: 9342840] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 350-1225 (ISOFORM 1), ALTERNATIVE SPLICING. Tissue: Fetal brain. |
| [9] | "A novel gene from the arm family." Fraser P.E., Levesque G., Rogaeva E.A., Yu G., St George-Hyslop P.H. Submitted (SEP-1996) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 689-1225 (ISOFORM 1). |
| [10] | Yu W., Sarginson J., Gibbs R.A. Submitted (NOV-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 746-1225 (ISOFORM 1). Tissue: Brain. |
| [11] | "Isolation of cDNAs from the Cri-du-chat critical region by direct screening of a chromosome 5-specific cDNA library." Simmons A.D., Overhauser J., Lovett M. Genome Res. 7:118-127(1997) [PubMed: 9049630] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 865-1225 (ISOFORMS 1/2). |
| [12] | "cdk5 modulates beta- and delta-catenin/Pin1 interactions in neuronal cells." Munoz J.P., Huichalaf C.H., Orellana D., Maccioni R.B. J. Cell. Biochem. 100:738-749(2007) [PubMed: 17009320] [Abstract] Cited for: PHOSPHORYLATION BY CDK5, INTERACTION WITH CDK5, TISSUE SPECIFICITY. |
| [13] | "ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage." Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J. Science 316:1160-1166(2007) [PubMed: 17525332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-474, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [14] | "Delta-catenin-induced dendritic morphogenesis. An essential role of p190RhoGEF interaction through Akt1-mediated phosphorylation." Kim H., Han J.-R., Park J., Oh M., James S.E., Chang S., Lu Q., Lee K.Y., Ki H., Song W.-J., Kim K. J. Biol. Chem. 283:977-987(2008) [PubMed: 17993462] [Abstract] Cited for: INTERACTION WITH RGNEF. |
| [15] | "PDZ-domain-directed basolateral targeting of the peripheral membrane protein FRMPD2 in epithelial cells." Stenzel N., Fetzer C.P., Heumann R., Erdmann K.S. J. Cell Sci. 122:3374-3384(2009) [PubMed: 19706687] [Abstract] Cited for: INTERACTION WITH FRMPD2. |
| [16] | "The consensus coding sequences of human breast and colorectal cancers." Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V. Velculescu V.E.Science 314:268-274(2006) [PubMed: 16959974] [Abstract] Cited for: VARIANT [LARGE SCALE ANALYSIS] SER-1159. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | U96136 mRNA. Translation: AAC63103.1. AB013805 mRNA. Translation: BAA36163.1. AC003089 Genomic DNA. Translation: AAB83940.1. EU350953 Genomic DNA. Translation: ABY59658.1. AC003954 Genomic DNA. No translation available. AC004633 Genomic DNA. No translation available. AC004648 Genomic DNA. No translation available. AC005367 Genomic DNA. No translation available. AC005610 Genomic DNA. No translation available. AC010433 Genomic DNA. No translation available. AC010626 Genomic DNA. No translation available. AC113390 Genomic DNA. No translation available. AC127460 Genomic DNA. No translation available. CH471102 Genomic DNA. Translation: EAX08053.1. U81004 mRNA. Translation: AAD00453.1. U52351 mRNA. Translation: AAB97957.1. U72665 mRNA. Translation: AAB68599.1. Different initiation. AF035302 mRNA. Translation: AAB88185.1. Frameshift. U52828 mRNA. Translation: AAB96357.1. |
| IPI | IPI00220032. IPI00301317. |
| RefSeq | NP_001323.1. NM_001332.2. |
| UniGene | Hs.314543. |
3D structure databases | |
| ProteinModelPortal | Q9UQB3. |
| SMR | Q9UQB3. Positions 544-1038. |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP-1138N. |
| STRING | Q9UQB3. |
PTM databases | |
| PhosphoSite | Q9UQB3. |
Polymorphism databases | |
| DMDM | 84028193. |
Proteomic databases | |
| PRIDE | Q9UQB3. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000304623; ENSP00000307134; ENSG00000169862. |
| GeneID | 1501. |
| KEGG | hsa:1501. |
| UCSC | uc003jfa.1. human. |
Organism-specific databases | |
| CTD | 1501. |
| GeneCards | GC05M011024. |
| H-InvDB | HIX0024778. |
| HGNC | HGNC:2516. CTNND2. |
| MIM | 604275. gene. |
| neXtProt | NX_Q9UQB3. |
| Orphanet | 281. Monosomy 5p. |
| PharmGKB | PA27017. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | prNOG08365. |
| GeneTree | ENSGT00550000074290. |
| HOVERGEN | HBG004284. |
| InParanoid | Q9UQB3. |
| OMA | GQSFSQX. |
| OrthoDB | EOG4S4PFC. |
| PhylomeDB | Q9UQB3. |
Gene expression databases | |
| ArrayExpress | Q9UQB3. |
| Bgee | Q9UQB3. |
| CleanEx | HS_CTNND2. |
| Genevestigator | Q9UQB3. |
| GermOnline | ENSG00000169862. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR011989. ARM-like. IPR016024. ARM-type_fold. IPR000225. Armadillo. [Graphical view] |
| Gene3D | G3DSA:1.25.10.10. ARM-like. 2 hits. |
| Pfam | PF00514. Arm. 4 hits. [Graphical view] |
| SMART | SM00185. ARM. 7 hits. [Graphical view] |
| SUPFAM | SSF48371. ARM-type_fold. 1 hit. |
| PROSITE | PS50176. ARM_REPEAT. 3 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 6217. |
| SOURCE | Search... |
Entry information
| Entry name | CTND2_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9UQB3 Secondary accession number(s): B0FTZ7 Q9UPM3 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 5 Human chromosome 5: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with