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Reviewed, UniProtKB/Swiss-Prot Q9UQ16 (DYN3_HUMAN)

Last modified November 3, 2009. Version 81. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Dynamin-3
    EC=3.6.5.5
Alternative name(s):
    Dynamin, testicular
    T-dynamin
Gene names
Name: DNM3
Synonyms: KIAA0820
OrganismHomo sapiens (Human) [Complete proteome]
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length869 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

Microtubule-associated force-producing protein involved in producing microtubule bundles and able to bind and hydrolyze GTP. Most probably involved in vesicular trafficking processes, in particular endocytosis By similarity.

Catalytic activity

GTP + H2O = GDP + phosphate.

Subcellular location

Cytoplasm Potential. Cytoplasmcytoskeleton Potential. Note: Microtubule-associated Potential.

Sequence similarities

Belongs to the dynamin family.

Contains 1 GED domain.

Contains 1 PH domain.

Binary interactions

Alternative products

This entry describes 4 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: Q9UQ16-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: Q9UQ16-2)

The sequence of this isoform differs from the canonical sequence as follows:
     516-525: Missing.
Isoform 3 (identifier: Q9UQ16-3)

The sequence of this isoform differs from the canonical sequence as follows:
     516-525: Missing.
     637-637: V → VGNNK
Isoform 4 (identifier: Q9UQ16-4)

The sequence of this isoform differs from the canonical sequence as follows:
     637-637: V → VGNNK

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 869869Dynamin-3
PRO_0000206573

Regions

Domain515 – 621107PH
Domain659 – 75092GED
Nucleotide binding38 – 458GTP By similarity
Nucleotide binding136 – 1405GTP By similarity
Nucleotide binding205 – 2084GTP By similarity

Amino acid modifications

Modified residue6041N6-acetyllysine Ref.6
Modified residue7691Phosphoserine By similarity

Natural variations

Alternative sequence516 – 52510Missing in isoform 2 and isoform 3.
VSP_034053
Alternative sequence6371V → VGNNK in isoform 3 and isoform 4.
VSP_034054

Experimental info

Sequence conflict3231T → S in CAB66647. Ref.3
Sequence conflict4121I → T in CAB66647. Ref.3
Sequence conflict8441S → R in CAB66647. Ref.3

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified June 10, 2008. Version 4.
Checksum: 01B376CF1AE6F2FE

FASTA86997,746
        10         20         30         40         50         60 
MGNREMEELI PLVNRLQDAF SALGQSCLLE LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG 

        70         80         90        100        110        120 
SGIVTRRPLV LQLVTSKAEY AEFLHCKGKK FTDFDEVRLE IEAETDRVTG MNKGISSIPI 

       130        140        150        160        170        180 
NLRVYSPHVL NLTLIDLPGI TKVPVGDQPP DIEYQIREMI MQFITRENCL ILAVTPANTD 

       190        200        210        220        230        240 
LANSDALKLA KEVDPQGLRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YVGVVNRSQK 

       250        260        270        280        290        300 
DIDGKKDIKA AMLAERKFFL SHPAYRHIAD RMGTPHLQKV LNQQLTNHIR DTLPNFRNKL 

       310        320        330        340        350        360 
QGQLLSIEHE VEAYKNFKPE DPTRKTKALL QMVQQFAVDF EKRIEGSGDQ VDTLELSGGA 

       370        380        390        400        410        420 
KINRIFHERF PFEIVKMEFN EKELRREISY AIKNIHGIRT GLFTPDMAFE AIVKKQIVKL 

       430        440        450        460        470        480 
KGPSLKSVDL VIQELINTVK KCTKKLANFP RLCEETERIV ANHIREREGK TKDQVLLLID 

       490        500        510        520        530        540 
IQVSYINTNH EDFIGFANAQ QRSSQVHKKT TVGNQGTNLP PSRQIVIRKG WLTISNIGIM 

       550        560        570        580        590        600 
KGGSKGYWFV LTAESLSWYK DDEEKEKKYM LPLDNLKVRD VEKSFMSSKH IFALFNTEQR 

       610        620        630        640        650        660 
NVYKDYRFLE LACDSQEDVD SWKASLLRAG VYPDKSVAEN DENGQAENFS MDPQLERQVE 

       670        680        690        700        710        720 
TIRNLVDSYM SIINKCIRDL IPKTIMHLMI NNVKDFINSE LLAQLYSSED QNTLMEESAE 

       730        740        750        760        770        780 
QAQRRDEMLR MYQALKEALG IIGDISTATV STPAPPPVDD SWIQHSRRSP PPSPTTQRRP 

       790        800        810        820        830        840 
TLSAPLARPT SGRGPAPAIP SPGPHSGAPP VPFRPGPLPP FPSSSDSFGA PPQVPSRPTR 

       850        860 
APPSVPSRRP PPSPTRPTII RPLESSLLD 

« Hide

Isoform 2.

Checksum: 922D192B91B47957
Show »

FASTA85996,682
Isoform 3.

Checksum: 42CC8A0553AB65BC
Show »

FASTA86397,095
Isoform 4.

Checksum: 95E83DB7F0350A58
Show »

FASTA87398,160

References

« Hide 'large scale' references
[1]"Prediction of the coding sequences of unidentified human genes. XII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro."
Nagase T., Ishikawa K., Suyama M., Kikuno R., Hirosawa M., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O.
DNA Res. 5:355-364(1998) [PubMed: 10048485] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
Tissue: Brain.
[2]"Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones."
Nakajima D., Okazaki N., Yamakawa H., Kikuno R., Ohara O., Nagase T.
DNA Res. 9:99-106(2002) [PubMed: 12168954] [Abstract]
Cited for: SEQUENCE REVISION.
[3]"Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs."
Wiemann S., Weil B., Wellenreuther R., Gassenhuber J., Glassl S., Ansorge W., Boecher M., Bloecker H., Bauersachs S., Blum H., Lauber J., Duesterhoeft A., Beyer A., Koehrer K., Strack N., Mewes H.-W., Ottenwaelder B., Obermaier B. expand/collapse author list , Tampe J., Heubner D., Wambutt R., Korn B., Klein M., Poustka A.
Genome Res. 11:422-435(2001) [PubMed: 11230166] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
Tissue: Kidney.
[4]"The DNA sequence and biological annotation of human chromosome 1."
Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. expand/collapse author list , Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.
Nature 441:315-321(2006) [PubMed: 16710414] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[5]Colinge J., Superti-Furga G., Bennett K.L.
Submitted (OCT-2008) to UniProtKB
Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY.
[6]"Lysine acetylation targets protein complexes and co-regulates major cellular functions."
Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T., Olsen J.V., Mann M.
Science 325:834-840(2009) [PubMed: 19608861] [Abstract]
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-604, MASS SPECTROMETRY.
+Additional computationally mapped references.

Cross-references

Sequence databases

AB020627 mRNA. Translation: BAA74843.2. Different initiation.
AL136712 mRNA. Translation: CAB66647.1.
AL031864 expand/collapse EMBL AC list , AL121984, AL133514, AL137157, AL445990, AL512843, Z97195 Genomic DNA. Translation: CAI22007.1.
AL121984 expand/collapse EMBL AC list , AL031864, AL133514, AL137157, AL445990, AL512843, Z97195 Genomic DNA. Translation: CAH71952.1.
AL133514 expand/collapse EMBL AC list , AL031864, AL121984, AL137157, AL445990, AL512843, Z97195 Genomic DNA. Translation: CAH74079.1.
AL137157 expand/collapse EMBL AC list , AL031864, AL121984, AL133514, AL445990, AL512843, Z97195 Genomic DNA. Translation: CAI19211.1.
AL445990 expand/collapse EMBL AC list , AL031864, AL121984, AL133514, AL137157, AL512843, Z97195 Genomic DNA. Translation: CAH69969.1.
AL445990 expand/collapse EMBL AC list , AL031864, AL121984, AL133514, AL137157, AL512843, Z97195 Genomic DNA. Translation: CAH69970.1.
AL512843 expand/collapse EMBL AC list , AL031864, AL121984, AL133514, AL137157, AL445990, Z97195 Genomic DNA. Translation: CAH71040.1.
AL512843 expand/collapse EMBL AC list , AL031864, AL121984, AL133514, AL137157, AL445990, Z97195 Genomic DNA. Translation: CAH71041.1.
AL121984 expand/collapse EMBL AC list , AL031864, AL133514, AL137157, AL445990, AL512843, Z97195 Genomic DNA. Translation: CAH71951.1.
AL133514 expand/collapse EMBL AC list , AL031864, AL121984, AL137157, AL445990, AL512843, Z97195 Genomic DNA. Translation: CAH74080.1.
Z97195 expand/collapse EMBL AC list , AL031864, AL121984, AL133514, AL137157, AL445990, AL512843 Genomic DNA. Translation: CAI19054.1.
Z97195 expand/collapse EMBL AC list , AL031864, AL121984, AL133514, AL137157, AL445990, AL512843 Genomic DNA. Translation: CAI19055.1.
AL137157 expand/collapse EMBL AC list , AL031864, AL121984, AL133514, AL445990, AL512843, Z97195 Genomic DNA. Translation: CAI19212.1.
AL031864 expand/collapse EMBL AC list , AL121984, AL133514, AL137157, AL445990, AL512843, Z97195 Genomic DNA. Translation: CAI22008.1.
IPIIPI00221332.
IPI00480085.
IPI00641436.
IPI00895844.
RefSeqNP_001129599.1.
NP_056384.2.
UniGeneHs.654775

3D structure databases

HSSPHSSP built from PDB template 2DYN based on UniProtKB Q05193.
SMRQ9UQ16. Positions 6-304, 516-625.
ModBaseSearch...

Protein-protein interaction databases

IntActQ9UQ16. 3 interactions.
STRINGQ9UQ16.

PTM databases

PhosphoSiteQ9UQ16.

Proteomic databases

PRIDEQ9UQ16.

Genome annotation databases

EnsemblENST00000355305; ENSP00000347457; ENSG00000197959; Homo sapiens. [Genome view]
ENST00000358155; ENSP00000350876; ENSG00000197959; Homo sapiens. [Genome view]
ENST00000359070; ENSP00000351969; ENSG00000197959; Homo sapiens. [Genome view]
ENST00000367731; ENSP00000356705; ENSG00000197959; Homo sapiens. [Genome view]
ENST00000367732; ENSP00000356706; ENSG00000197959; Homo sapiens. [Genome view]
ENST00000367733; ENSP00000356707; ENSG00000197959; Homo sapiens. [Genome view]
GeneID26052.
KEGGhsa:26052.
UCSCuc001gie.1. human.
uc001gif.1. human.

Organism-specific databases

CTD26052.
GeneCardsGC01P170077.
H-InvDBHIX0038479.
HGNCHGNC:29125. DNM3.
MIM611445. gene.
PharmGKBPA134954683.
HUGESearch...
GenAtlasSearch...

Phylogenomic databases

HOVERGENQ9UQ16.
OMAPFPNSSD.

Enzyme and pathway databases

BRENDA3.6.5.5. 247.

Gene expression databases

ArrayExpressQ9UQ16.
BgeeQ9UQ16.
GenevestigatorQ9UQ16.
GermOnlineENSG00000197959. Homo sapiens.

Family and domain databases

InterProIPR000375. Dynamin_central.
IPR001401. Dynamin_GTPase.
IPR019762. Dynamin_GTPase_CS.
IPR003130. GED.
IPR011993. PH_type.
IPR001849. Pleckstrin_homology.
[Graphical view]
Gene3DG3DSA:2.30.29.30. PH_type. 1 hit.
PfamPF01031. Dynamin_M. 1 hit.
PF00350. Dynamin_N. 1 hit.
PF02212. GED. 1 hit.
PF00169. PH. 1 hit.
[Graphical view]
PRINTSPR00195. DYNAMIN.
SMARTSM00053. DYNc. 1 hit.
SM00302. GED. 1 hit.
SM00233. PH. 1 hit.
[Graphical view]
PROSITEPS00410. DYNAMIN. 1 hit.
PS51388. GED. 1 hit.
PS50003. PH_DOMAIN. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

NextBio47916.
SOURCESearch...

Entry information

Entry nameDYN3_HUMAN
AccessionPrimary (citable) accession number: Q9UQ16
Secondary accession number(s): A9Z1Y1 expand/collapse secondary AC list , O14982, O95555, Q1MTM8, Q5W129, Q9H0P3, Q9H548, Q9NQ68, Q9NQN6
Entry history
Integrated into UniProtKB/Swiss-Prot: January 17, 2003
Last sequence update: June 10, 2008
Last modified: November 3, 2009
This is version 81 of the entry and version 4 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHPI (Human Proteome Initiative)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

Human chromosome 1

Human chromosome 1: entries, gene names and cross-references to MIM

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents