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Protein

Coronin-2B

Gene

CORO2B

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

May play a role in the reorganization of neuronal actin structure.

GO - Molecular functioni

  • actin binding Source: UniProtKB
  • actin filament binding Source: GO_Central

GO - Biological processi

  • actin cytoskeleton organization Source: UniProtKB
Complete GO annotation...

Keywords - Ligandi

Actin-binding

Enzyme and pathway databases

SignaLinkiQ9UQ03.

Names & Taxonomyi

Protein namesi
Recommended name:
Coronin-2B
Alternative name(s):
Coronin-like protein C
Short name:
Clipin-C
Protein FC96
Gene namesi
Name:CORO2B
Synonyms:KIAA0925
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 15

Organism-specific databases

HGNCiHGNC:2256. CORO2B.

Subcellular locationi

GO - Cellular componenti

  • actin cytoskeleton Source: UniProtKB
  • cytoplasm Source: UniProtKB-KW
  • membrane Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA26772.

Polymorphism and mutation databases

BioMutaiCORO2B.
DMDMi254763439.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 480480Coronin-2BPRO_0000050930Add
BLAST

Proteomic databases

MaxQBiQ9UQ03.
PaxDbiQ9UQ03.
PRIDEiQ9UQ03.

PTM databases

PhosphoSiteiQ9UQ03.

Expressioni

Tissue specificityi

Expressed predominantly in brain.

Gene expression databases

BgeeiQ9UQ03.
CleanExiHS_CORO2B.
GenevisibleiQ9UQ03. HS.

Organism-specific databases

HPAiHPA017960.

Interactioni

Subunit structurei

Binds to F-actin and to vinculin.

Binary interactionsi

WithEntry#Exp.IntActNotes
APPBP2Q926243EBI-723376,EBI-743771

Protein-protein interaction databases

BioGridi115663. 6 interactions.
IntActiQ9UQ03. 3 interactions.
MINTiMINT-1394971.
STRINGi9606.ENSP00000454783.

Structurei

3D structure databases

ProteinModelPortaliQ9UQ03.
SMRiQ9UQ03. Positions 15-399.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati29 – 7749WD 1Add
BLAST
Repeati78 – 12750WD 2Add
BLAST
Repeati128 – 17043WD 3Add
BLAST
Repeati171 – 21242WD 4Add
BLAST
Repeati213 – 25947WD 5Add
BLAST
Repeati260 – 30546WD 6Add
BLAST
Repeati306 – 34540WD 7Add
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili436 – 47944Sequence AnalysisAdd
BLAST

Sequence similaritiesi

Belongs to the WD repeat coronin family.Curated
Contains 7 WD repeats.PROSITE-ProRule annotation

Keywords - Domaini

Coiled coil, Repeat, WD repeat

Phylogenomic databases

eggNOGiCOG2319.
GeneTreeiENSGT00760000119195.
HOGENOMiHOG000166356.
HOVERGENiHBG059978.
InParanoidiQ9UQ03.
KOiK13887.
OMAiREHCFDG.
OrthoDBiEOG7J70FB.
PhylomeDBiQ9UQ03.
TreeFamiTF314280.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR027339. CORO2B.
IPR015505. Coronin.
IPR015048. DUF1899.
IPR015049. DUF1900.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PANTHERiPTHR10856. PTHR10856. 1 hit.
PTHR10856:SF17. PTHR10856:SF17. 1 hit.
PfamiPF08953. DUF1899. 1 hit.
PF08954. DUF1900. 1 hit.
PF00400. WD40. 3 hits.
[Graphical view]
SMARTiSM00320. WD40. 4 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS00678. WD_REPEATS_1. 2 hits.
PS50082. WD_REPEATS_2. 3 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9UQ03-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MTVTKMSWRP QYRSSKFRNV YGKVANREHC FDGIPITKNV HDNHFCAVNT
60 70 80 90 100
RFLAIVTESA GGGSFLVIPL EQTGRIEPNY PKVCGHQGNV LDIKWNPFID
110 120 130 140 150
NIIASCSEDT SVRIWEIPEG GLKRNMTEAL LELHGHSRRV GLVEWHPTTN
160 170 180 190 200
NILFSAGYDY KVLIWNLDVG EPVKMIDCHT DVILCMSFNT DGSLLTTTCK
210 220 230 240 250
DKKLRVIEPR SGRVLQEANC KNHRVNRVVF LGNMKRLLTT GVSRWNTRQI
260 270 280 290 300
ALWDQEDLSM PLIEEEIDGL SGLLFPFYDA DTHMLYLAGK GDGNIRYYEI
310 320 330 340 350
STEKPYLSYL MEFRSPAPQK GLGVMPKHGL DVSACEVFRF YKLVTLKGLI
360 370 380 390 400
EPISMIVPRR SDSYQEDIYP MTPGTEPALT PDEWLGGINR DPVLMSLKEG
410 420 430 440 450
YKKSSKMVFK APIKEKKSVV VNGIDLLENV PPRTENELLR MFFRQQDEIR
460 470 480
RLKEELAQKD IRIRQLQLEL KNLRNSPKNC
Length:480
Mass (Da):54,953
Last modified:July 28, 2009 - v4
Checksum:iCE91834164A23D79
GO
Isoform 2 (identifier: Q9UQ03-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-6: MTVTKM → M

Show »
Length:475
Mass (Da):54,393
Checksum:i5C85A21F2202A197
GO

Sequence cautioni

The sequence AAH26335.1 differs from that shown. Reason: Erroneous initiation. Curated
The sequence BAA36341.1 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti128 – 1281E → A in BAA36341 (PubMed:10224093).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti238 – 2381L → V.1 Publication
Corresponds to variant rs17852400 [ dbSNP | Ensembl ].
VAR_058323
Natural varianti318 – 3181P → L in a colorectal cancer sample; somatic mutation. 1 Publication
VAR_035878

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 66MTVTKM → M in isoform 2. 1 PublicationVSP_037706

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB010098 mRNA. Translation: BAA36341.1. Different initiation.
AK289678 mRNA. Translation: BAF82367.1.
AC090734 Genomic DNA. No translation available.
AC105014 Genomic DNA. No translation available.
BC026335 mRNA. Translation: AAH26335.1. Different initiation.
AB023142 mRNA. Translation: BAA76769.1.
CCDSiCCDS10229.2. [Q9UQ03-1]
CCDS53952.1. [Q9UQ03-2]
RefSeqiNP_001177385.1. NM_001190456.1. [Q9UQ03-2]
NP_001177386.1. NM_001190457.1. [Q9UQ03-2]
NP_006082.3. NM_006091.4. [Q9UQ03-1]
XP_005254182.1. XM_005254125.1. [Q9UQ03-2]
UniGeneiHs.551213.

Genome annotation databases

EnsembliENST00000261861; ENSP00000261861; ENSG00000103647. [Q9UQ03-2]
ENST00000540068; ENSP00000446250; ENSG00000103647. [Q9UQ03-2]
ENST00000543950; ENSP00000443819; ENSG00000103647. [Q9UQ03-2]
ENST00000566799; ENSP00000454783; ENSG00000103647. [Q9UQ03-1]
GeneIDi10391.
KEGGihsa:10391.
UCSCiuc002arj.4. human. [Q9UQ03-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB010098 mRNA. Translation: BAA36341.1. Different initiation.
AK289678 mRNA. Translation: BAF82367.1.
AC090734 Genomic DNA. No translation available.
AC105014 Genomic DNA. No translation available.
BC026335 mRNA. Translation: AAH26335.1. Different initiation.
AB023142 mRNA. Translation: BAA76769.1.
CCDSiCCDS10229.2. [Q9UQ03-1]
CCDS53952.1. [Q9UQ03-2]
RefSeqiNP_001177385.1. NM_001190456.1. [Q9UQ03-2]
NP_001177386.1. NM_001190457.1. [Q9UQ03-2]
NP_006082.3. NM_006091.4. [Q9UQ03-1]
XP_005254182.1. XM_005254125.1. [Q9UQ03-2]
UniGeneiHs.551213.

3D structure databases

ProteinModelPortaliQ9UQ03.
SMRiQ9UQ03. Positions 15-399.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi115663. 6 interactions.
IntActiQ9UQ03. 3 interactions.
MINTiMINT-1394971.
STRINGi9606.ENSP00000454783.

PTM databases

PhosphoSiteiQ9UQ03.

Polymorphism and mutation databases

BioMutaiCORO2B.
DMDMi254763439.

Proteomic databases

MaxQBiQ9UQ03.
PaxDbiQ9UQ03.
PRIDEiQ9UQ03.

Protocols and materials databases

DNASUi10391.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000261861; ENSP00000261861; ENSG00000103647. [Q9UQ03-2]
ENST00000540068; ENSP00000446250; ENSG00000103647. [Q9UQ03-2]
ENST00000543950; ENSP00000443819; ENSG00000103647. [Q9UQ03-2]
ENST00000566799; ENSP00000454783; ENSG00000103647. [Q9UQ03-1]
GeneIDi10391.
KEGGihsa:10391.
UCSCiuc002arj.4. human. [Q9UQ03-1]

Organism-specific databases

CTDi10391.
GeneCardsiGC15P068871.
HGNCiHGNC:2256. CORO2B.
HPAiHPA017960.
MIMi605002. gene.
neXtProtiNX_Q9UQ03.
PharmGKBiPA26772.
HUGEiSearch...
GenAtlasiSearch...

Phylogenomic databases

eggNOGiCOG2319.
GeneTreeiENSGT00760000119195.
HOGENOMiHOG000166356.
HOVERGENiHBG059978.
InParanoidiQ9UQ03.
KOiK13887.
OMAiREHCFDG.
OrthoDBiEOG7J70FB.
PhylomeDBiQ9UQ03.
TreeFamiTF314280.

Enzyme and pathway databases

SignaLinkiQ9UQ03.

Miscellaneous databases

ChiTaRSiCORO2B. human.
GenomeRNAii10391.
NextBioi39366.
PROiQ9UQ03.
SOURCEiSearch...

Gene expression databases

BgeeiQ9UQ03.
CleanExiHS_CORO2B.
GenevisibleiQ9UQ03. HS.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR027339. CORO2B.
IPR015505. Coronin.
IPR015048. DUF1899.
IPR015049. DUF1900.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PANTHERiPTHR10856. PTHR10856. 1 hit.
PTHR10856:SF17. PTHR10856:SF17. 1 hit.
PfamiPF08953. DUF1899. 1 hit.
PF08954. DUF1900. 1 hit.
PF00400. WD40. 3 hits.
[Graphical view]
SMARTiSM00320. WD40. 4 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS00678. WD_REPEATS_1. 2 hits.
PS50082. WD_REPEATS_2. 3 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A neurally enriched coronin-like protein, ClipinC, is a novel candidate for an actin cytoskeleton-cortical membrane-linking protein."
    Nakamura T., Takeuchi K., Muraoka S., Takezoe H., Takahashi N., Mori N.
    J. Biol. Chem. 274:13322-13327(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
    Tissue: Brain.
  2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Tissue: Amygdala.
  3. "Analysis of the DNA sequence and duplication history of human chromosome 15."
    Zody M.C., Garber M., Sharpe T., Young S.K., Rowen L., O'Neill K., Whittaker C.A., Kamal M., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Kodira C.D., Madan A., Qin S., Yang X., Abbasi N., Abouelleil A.
    , Arachchi H.M., Baradarani L., Birditt B., Bloom S., Bloom T., Borowsky M.L., Burke J., Butler J., Cook A., DeArellano K., DeCaprio D., Dorris L. III, Dors M., Eichler E.E., Engels R., Fahey J., Fleetwood P., Friedman C., Gearin G., Hall J.L., Hensley G., Johnson E., Jones C., Kamat A., Kaur A., Locke D.P., Madan A., Munson G., Jaffe D.B., Lui A., Macdonald P., Mauceli E., Naylor J.W., Nesbitt R., Nicol R., O'Leary S.B., Ratcliffe A., Rounsley S., She X., Sneddon K.M.B., Stewart S., Sougnez C., Stone S.M., Topham K., Vincent D., Wang S., Zimmer A.R., Birren B.W., Hood L., Lander E.S., Nusbaum C.
    Nature 440:671-675(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT VAL-238.
    Tissue: Brain.
  5. "Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro."
    Nagase T., Ishikawa K., Suyama M., Kikuno R., Hirosawa M., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O.
    DNA Res. 6:63-70(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2-480 (ISOFORM 1).
    Tissue: Brain.
  6. Cited for: VARIANT [LARGE SCALE ANALYSIS] LEU-318.

Entry informationi

Entry nameiCOR2B_HUMAN
AccessioniPrimary (citable) accession number: Q9UQ03
Secondary accession number(s): A8K0W3, O94767, Q8TAN1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 11, 2001
Last sequence update: July 28, 2009
Last modified: June 24, 2015
This is version 129 of the entry and version 4 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 15
    Human chromosome 15: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.