Reviewed,
UniProtKB/Swiss-Prot Q9UPW5 (CBPC1_HUMAN)
Last modified
November 24, 2009.
Version 57.
History...
Clusters with 100%,
90%,
50% identity |
Documents (6) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Cytosolic carboxypeptidase 1 EC=3.4.17.- Alternative name(s): ATP/GTP-binding protein 1 Nervous system nuclear protein induced by axotomy | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Complete proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1226 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | May play a role in the processing of tubulin By similarity. |
| Cofactor | Binds 1 zinc ion per subunit Potential. |
| Subcellular location | |
| Sequence similarities | Belongs to the peptidase M14 family. |
| Sequence caution | The sequence BAA82987.2 differs from that shown. Reason: Frameshift at position 10. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cytoplasm Nucleus |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Ligand | Metal-binding Zinc |
| Molecular function | Carboxypeptidase Hydrolase Metalloprotease Protease |
| PTM | Phosphoprotein |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | proteolysis Inferred from electronic annotation. Source: InterPro |
| Cellular component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell nucleusInferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | metallocarboxypeptidase activity Inferred from electronic annotation. Source: InterPro zinc ion bindingInferred from electronic annotation. Source: UniProtKB-KW |
| Complete GO annotation... | |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9UPW5-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9UPW5-2) The sequence of this isoform differs from the canonical sequence as follows: 304-343: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1226 | 1226 | Cytosolic carboxypeptidase 1 | PRO_0000308690 | |||||
Sites | |||||||||
| Active site | 970 | 1 | Nucleophile By similarity | ||||||
| Metal binding | 920 | 1 | Zinc By similarity | ||||||
| Metal binding | 923 | 1 | Zinc By similarity | ||||||
| Metal binding | 1017 | 1 | Zinc By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 1167 | 1 | Phosphothreonine | ||||||
| Modified residue | 1168 | 1 | Phosphoserine Ref.8 | ||||||
Natural variations | |||||||||
| Alternative sequence | 304 – 343 | 40 | Missing in isoform 2. | VSP_029044 | |||||
| Natural variant | 423 | 1 | E → K in a colorectal cancer sample; somatic mutation. Ref.11 | VAR_036884 | |||||
Experimental info | |||||||||
| Sequence conflict | 274 | 1 | Q → R in BAA91749. Ref.3 | ||||||
| Sequence conflict | 398 – 399 | 2 | DI → KK in CAH56222. Ref.7 | ||||||
| Sequence conflict | 464 | 1 | E → G in BAA91749. Ref.3 | ||||||
| Sequence conflict | 495 | 1 | M → V in BAB14505. Ref.3 | ||||||
| Sequence conflict | 574 | 1 | M → V in BAB14100. Ref.3 | ||||||
| Sequence conflict | 598 | 1 | E → G in BAA91749. Ref.3 | ||||||
| Sequence conflict | 712 | 1 | F → I in CAH56222. Ref.7 | ||||||
| Sequence conflict | 756 | 1 | M → T in BAB14100. Ref.3 | ||||||
| Sequence conflict | 812 | 1 | S → P in BAB14505. Ref.3 | ||||||
| Sequence conflict | 830 | 1 | T → A in CAH56158. Ref.7 | ||||||
| Sequence conflict | 909 | 1 | N → D in BAB14505. Ref.3 | ||||||
| Sequence conflict | 1054 | 1 | Y → F in BAB14505. Ref.3 | ||||||
| Sequence conflict | 1153 | 1 | L → P in CAH56158. Ref.7 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro." Kikuno R., Nagase T., Ishikawa K., Hirosawa M., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O. DNA Res. 6:197-205(1999) [PubMed: 10470851] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Brain. |
| [2] | "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones." Nakajima D., Okazaki N., Yamakawa H., Kikuno R., Ohara O., Nagase T. DNA Res. 9:99-106(2002) [PubMed: 12168954] [Abstract] Cited for: SEQUENCE REVISION. |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). |
| [4] | "DNA sequence and analysis of human chromosome 9." Humphray S.J., Oliver K., Hunt A.R., Plumb R.W., Loveland J.E., Howe K.L., Andrews T.D., Searle S., Hunt S.E., Scott C.E., Jones M.C., Ainscough R., Almeida J.P., Ambrose K.D., Ashwell R.I.S., Babbage A.K., Babbage S., Bagguley C.L. Dunham I.Nature 429:369-374(2004) [PubMed: 15164053] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Placenta. |
| [7] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 396-1226. Tissue: Lymph node and Oesophageal carcinoma. |
| [8] | "Large-scale characterization of HeLa cell nuclear phosphoproteins." Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J., Li J., Cohn M.A., Cantley L.C., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004) [PubMed: 15302935] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1168, MASS SPECTROMETRY. Tissue: Epithelium. |
| [9] | Colinge J., Superti-Furga G., Bennett K.L. Submitted (OCT-2008) to UniProtKB Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
| [10] | "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach." Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S. Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-1167, MASS SPECTROMETRY. |
| [11] | "The consensus coding sequences of human breast and colorectal cancers." Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V. Velculescu V.E.Science 314:268-274(2006) [PubMed: 16959974] [Abstract] Cited for: VARIANT [LARGE SCALE ANALYSIS] LYS-423. |
Cross-references
Sequence databases | |
|---|---|
| AB028958 mRNA. Translation: BAA82987.2. Frameshift. AK001544 mRNA. Translation: BAA91749.1. AK022562 mRNA. Translation: BAB14100.1. Different initiation. AK023280 mRNA. Translation: BAB14505.1. Different initiation. AL157882, AL451131 Genomic DNA. Translation: CAH71213.1. AL157882, AL451131 Genomic DNA. Translation: CAH71214.1. AL451131, AL157882 Genomic DNA. Translation: CAH72317.1. AL451131, AL157882 Genomic DNA. Translation: CAH72318.1. CH471089 Genomic DNA. Translation: EAW62694.1. CH471089 Genomic DNA. Translation: EAW62698.1. BC060815 mRNA. Translation: AAH60815.1. BX648366 mRNA. Translation: CAH56158.1. AL833359 mRNA. Translation: CAH56222.1. Different initiation. | |
| IPI | IPI00167865. IPI00942428. |
| RefSeq | NP_056054.2. |
| UniGene | Hs.714728 |
3D structure databases | |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q9UPW5. |
Protein family/group databases | |
| MEROPS | M14.028. |
PTM databases | |
| PhosphoSite | Q9UPW5. |
Proteomic databases | |
| PRIDE | Q9UPW5. |
Genome annotation databases | |
| Ensembl | ENST00000357081; ENSP00000349592; ENSG00000135049; Homo sapiens. [Genome view] ENST00000395847; ENSP00000379188; ENSG00000135049; Homo sapiens. [Genome view] |
| GeneID | 23287. |
| KEGG | hsa:23287. |
| UCSC | uc004aoe.2. human. uc010mqc.1. human. |
Organism-specific databases | |
| CTD | 23287. |
| GeneCards | GC09M087351. |
| HGNC | HGNC:17258. AGTPBP1. |
| MIM | 606830. gene. |
| PharmGKB | PA24630. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOVERGEN | Q9UPW5. |
Gene expression databases | |
| ArrayExpress | Q9UPW5. |
| Bgee | Q9UPW5. |
| CleanEx | HS_AGTPBP1. |
| Genevestigator | Q9UPW5. |
Family and domain databases | |
| InterPro | IPR016024. ARM-type_fold. IPR000834. Peptidase_M14. [Graphical view] |
| Pfam | PF00246. Peptidase_M14. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 45098. |
| SOURCE | Search... |
Entry information
| Entry name | CBPC1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9UPW5 Secondary accession number(s): Q5VV80 Q9NVK1 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 9 Human chromosome 9: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| Peptidase families Classification of peptidase families and list of entries |
| SIMILARITY comments Index of protein domains and families |

Clusters with


