Reviewed,
UniProtKB/Swiss-Prot Q9UPU5 (UBP24_HUMAN)
Last modified
June 16, 2009.
Version 76.
History...
Clusters with 100%,
90%,
50% identity |
Documents (6) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Ubiquitin carboxyl-terminal hydrolase 24 EC=3.1.2.15 Alternative name(s): Ubiquitin thioesterase 24 Ubiquitin-specific-processing protease 24 Deubiquitinating enzyme 24 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 2620 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Involved in the ubiquitin-dependent proteolytic pathway in conjunction with the 26S proteasome By similarity. |
| Catalytic activity | Ubiquitin C-terminal thioester + H2O = ubiquitin + a thiol. |
| Post-translational modification | Phosphorylated upon DNA damage, probably by ATM or ATR. Ref.5 Ref.6 Ref.7 Ref.8 Ref.9 Ref.10 Ref.11 Ref.12 Ref.13 Ref.14 |
| Sequence similarities | Belongs to the peptidase C19 family. Contains 1 UBA domain. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Ubl conjugation pathway |
| Coding sequence diversity | Polymorphism |
| Molecular function | Hydrolase Protease Thiol protease |
| PTM | Phosphoprotein |
| Gene Ontology (GO) | |
| Biological process | ubiquitin-dependent protein catabolic process Inferred from electronic annotation. Source: InterPro |
| Molecular function | cysteine-type peptidase activity Inferred from electronic annotation. Source: UniProtKB-KW ubiquitin thiolesterase activityInferred from electronic annotation. Source: EC |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 2620 | 2620 | Ubiquitin carboxyl-terminal hydrolase 24 | PRO_0000080652 | |||||
Regions | |||||||||
| Domain | 3 – 44 | 42 | UBA | ||||||
| Compositional bias | 47 – 94 | 48 | Gly-rich | ||||||
| Compositional bias | 1035 – 1062 | 28 | Ser-rich | ||||||
| Compositional bias | 1132 – 1164 | 33 | Ser-rich | ||||||
Sites | |||||||||
| Active site | 1698 | 1 | By similarity | ||||||
| Active site | 1962 | 1 | By similarity | ||||||
| Active site | 1970 | 1 | By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 1141 | 1 | Phosphoserine Ref.10 Ref.14 | ||||||
| Modified residue | 1616 | 1 | Phosphoserine Ref.7 | ||||||
| Modified residue | 1620 | 1 | Phosphoserine Ref.9 | ||||||
| Modified residue | 1943 | 1 | Phosphoserine Ref.6 | ||||||
| Modified residue | 2024 | 1 | Phosphotyrosine Ref.5 Ref.6 | ||||||
| Modified residue | 2047 | 1 | Phosphoserine Ref.7 Ref.8 Ref.10 Ref.11 Ref.13 Ref.14 | ||||||
| Modified residue | 2077 | 1 | Phosphoserine Ref.13 | ||||||
| Modified residue | 2559 | 1 | Phosphothreonine Ref.6 | ||||||
| Modified residue | 2565 | 1 | Phosphothreonine Ref.14 | ||||||
| Modified residue | 2604 | 1 | Phosphoserine Ref.12 Ref.13 Ref.14 | ||||||
Natural variations | |||||||||
| Natural variant | 226 | 1 | T → I: dbSNP rs1165222. | VAR_047154 | |||||
| Natural variant | 1940 | 1 | G → S: dbSNP rs2274540. | VAR_047155 | |||||
| Natural variant | 2134 | 1 | Y → S: dbSNP rs12753590. | VAR_047156 | |||||
| Natural variant | 2468 | 1 | V → A: dbSNP rs487230. Ref.2 Ref.3 | VAR_047157 | |||||
Experimental info | |||||||||
| Sequence conflict | 840 | 1 | N → S in BAC86814. Ref.2 | ||||||
| Sequence conflict | 990 | 1 | I → L in BAC86814. Ref.2 | ||||||
| Sequence conflict | 1253 | 1 | P → S in BAC86814. Ref.2 | ||||||
| Sequence conflict | 1776 | 1 | E → G in BAC86814. Ref.2 | ||||||
| Sequence conflict | 2576 | 1 | K → R in BAA91084. Ref.2 | ||||||
Sequences
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References
| [1] | "The DNA sequence and biological annotation of human chromosome 1." Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. Bentley D.R.Nature 441:315-321(2006) [PubMed: 16710414] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [2] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 751-2082 AND 2256-2620, VARIANT ALA-2468. |
| [3] | "Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro." Kikuno R., Nagase T., Ishikawa K., Hirosawa M., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O. DNA Res. 6:197-205(1999) [PubMed: 10470851] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2233-2620, VARIANT ALA-2468. Tissue: Brain. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1483-2620. Tissue: Placenta. |
| [5] | "Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry." Brill L.M., Salomon A.R., Ficarro S.B., Mukherji M., Stettler-Gill M., Peters E.C. Anal. Chem. 76:2763-2772(2004) [PubMed: 15144186] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-2024, MASS SPECTROMETRY. Tissue: T-cell. |
| [6] | "Large-scale characterization of HeLa cell nuclear phosphoproteins." Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J., Li J., Cohn M.A., Cantley L.C., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004) [PubMed: 15302935] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1943; TYR-2024 AND THR-2559, MASS SPECTROMETRY. Tissue: Epithelium. |
| [7] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed: 17081983] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1616 AND SER-2047, MASS SPECTROMETRY. Tissue: Epithelium. |
| [8] | "A probability-based approach for high-throughput protein phosphorylation analysis and site localization." Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P. Nat. Biotechnol. 24:1285-1292(2006) [PubMed: 16964243] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2047, MASS SPECTROMETRY. Tissue: Epithelium. |
| [9] | "ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage." Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J. Science 316:1160-1166(2007) [PubMed: 17525332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1620, MASS SPECTROMETRY. |
| [10] | "Automated phosphoproteome analysis for cultured cancer cells by two-dimensional nanoLC-MS using a calcined titania/C18 biphasic column." Imami K., Sugiyama N., Kyono Y., Tomita M., Ishihama Y. Anal. Sci. 24:161-166(2008) [PubMed: 18187866] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1141 AND SER-2047, MASS SPECTROMETRY. |
| [11] | "Phosphoproteome of resting human platelets." Zahedi R.P., Lewandrowski U., Wiesner J., Wortelkamp S., Moebius J., Schuetz C., Walter U., Gambaryan S., Sickmann A. J. Proteome Res. 7:526-534(2008) [PubMed: 18088087] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2047, MASS SPECTROMETRY. Tissue: Platelet. |
| [12] | "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis." Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III J. Proteome Res. 7:1346-1351(2008) [PubMed: 18220336] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2604, MASS SPECTROMETRY. |
| [13] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2047; SER-2077 AND SER-2604, MASS SPECTROMETRY. |
| [14] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1141; SER-2047; THR-2565 AND SER-2604, MASS SPECTROMETRY. |
| [15] | Colinge J., Superti-Furga G., Bennett K.L. Submitted (OCT-2008) to UniProtKB Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| AC091609 Genomic DNA. No translation available. AK000321 mRNA. Translation: BAA91084.1. Different initiation. AK127075 mRNA. Translation: BAC86814.1. AB028980 mRNA. Translation: BAA83009.1. BC029660 mRNA. Translation: AAH29660.1. Different initiation. | |
| IPI | IPI00902614. |
| RefSeq | NP_056121.1. |
| UniGene | Hs.477009 |
3D structure databases | |
| HSSP | HSSP built from PDB template 1NB8 based on UniProtKB Q93009. |
| ModBase | Search... |
Protein family/group databases | |
| MEROPS | C19.047. |
PTM databases | |
| PhosphoSite | Q9UPU5. |
Proteomic databases | |
| PRIDE | Q9UPU5. |
Genome annotation databases | |
| Ensembl | ENSG00000162402. Homo sapiens. [Contig view] |
| GeneID | 23358. |
| KEGG | hsa:23358. |
Organism-specific databases | |
| GeneCards | GC01M055244. |
| HGNC | HGNC:12623. USP24. |
| MIM | 610569. gene. |
| PharmGKB | PA37248. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOGENOM | Q9UPU5. |
| HOVERGEN | Q9UPU5. |
| OMA | Q9UPU5. NNPQFVW. |
Enzyme and pathway databases | |
| BRENDA | 3.1.2.15. 247. |
Gene expression databases | |
| ArrayExpress | Q9UPU5. |
| Bgee | Q9UPU5. |
| CleanEx | HS_USP24. |
| GermOnline | ENSG00000162402. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR018200. Pept_C19ubi-hydrolase_C_CS. IPR001394. Peptidase_C19. IPR000449. UBA/transl_elong_EF1B_N. IPR015940. UBA/transl_elong_EF1B_N_euk. [Graphical view] |
| Pfam | PF00627. UBA. 1 hit. PF00443. UCH. 1 hit. [Graphical view] |
| PROSITE | PS50030. UBA. 1 hit. PS00972. UCH_2_1. 1 hit. PS00973. UCH_2_2. 1 hit. PS50235. UCH_2_3. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| SOURCE | Search... |
Entry information
| Entry name | UBP24_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9UPU5 Secondary accession number(s): Q6ZSY2, Q8N2Y4, Q9NXD1 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| Human chromosome 1 Human chromosome 1: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| Peptidase families Classification of peptidase families and list of entries |
| SIMILARITY comments Index of protein domains and families |

Clusters with


