Q9UPU5 (UBP24_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 102.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Ubiquitin carboxyl-terminal hydrolase 24 EC=3.4.19.12 Alternative name(s): Deubiquitinating enzyme 24 Ubiquitin thiolesterase 24 Ubiquitin-specific-processing protease 24 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 2620 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Involved in the ubiquitin-dependent proteolytic pathway in conjunction with the 26S proteasome By similarity. |
| Catalytic activity | Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal). |
| Post-translational modification | Phosphorylated upon DNA damage, probably by ATM or ATR. Ref.5 Ref.6 Ref.7 Ref.8 Ref.9 Ref.10 Ref.11 Ref.12 Ref.13 Ref.14 Ref.15 Ref.16 Ref.17 Ref.18 |
| Sequence similarities | Belongs to the peptidase C19 family. Contains 1 UBA domain. |
| Sequence caution | The sequence AAH29660.1 differs from that shown. Reason: Erroneous initiation. The sequence BAA91084.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Ubl conjugation pathway |
| Coding sequence diversity | Polymorphism |
| Molecular function | Hydrolase Protease Thiol protease |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | ubiquitin-dependent protein catabolic process Inferred from electronic annotation. Source: InterPro |
| Molecular function | binding Inferred from electronic annotation. Source: InterPro cysteine-type peptidase activityInferred from electronic annotation. Source: UniProtKB-KW ubiquitin thiolesterase activityInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 2620 | 2620 | Ubiquitin carboxyl-terminal hydrolase 24 | PRO_0000080652 | |||||
Regions | |||||||||
| Domain | 3 – 44 | 42 | UBA | ||||||
| Compositional bias | 47 – 94 | 48 | Gly-rich | ||||||
| Compositional bias | 1035 – 1062 | 28 | Ser-rich | ||||||
| Compositional bias | 1132 – 1164 | 33 | Ser-rich | ||||||
Sites | |||||||||
| Active site | 1698 | 1 | Nucleophile By similarity | ||||||
| Active site | 1970 | 1 | Proton acceptor By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 1141 | 1 | Phosphoserine Ref.11 Ref.15 | ||||||
| Modified residue | 1616 | 1 | Phosphoserine Ref.7 | ||||||
| Modified residue | 1620 | 1 | Phosphoserine Ref.9 | ||||||
| Modified residue | 1943 | 1 | Phosphoserine Ref.6 | ||||||
| Modified residue | 2024 | 1 | Phosphotyrosine Ref.5 Ref.6 | ||||||
| Modified residue | 2047 | 1 | Phosphoserine Ref.7 Ref.8 Ref.10 Ref.11 Ref.12 Ref.14 Ref.15 Ref.16 Ref.17 Ref.18 | ||||||
| Modified residue | 2077 | 1 | Phosphoserine Ref.14 | ||||||
| Modified residue | 2559 | 1 | Phosphothreonine Ref.6 | ||||||
| Modified residue | 2561 | 1 | Phosphoserine Ref.18 | ||||||
| Modified residue | 2565 | 1 | Phosphothreonine Ref.15 Ref.18 | ||||||
| Modified residue | 2604 | 1 | Phosphoserine Ref.13 Ref.14 Ref.15 | ||||||
Natural variations | |||||||||
| Natural variant | 226 | 1 | T → I. Corresponds to variant rs1165222 [ dbSNP | Ensembl ]. | VAR_047154 | |||||
| Natural variant | 1940 | 1 | G → S. Corresponds to variant rs2274540 [ dbSNP | Ensembl ]. | VAR_047155 | |||||
| Natural variant | 2134 | 1 | Y → S. Corresponds to variant rs12753590 [ dbSNP | Ensembl ]. | VAR_047156 | |||||
| Natural variant | 2468 | 1 | V → A. Ref.2 Ref.3 Corresponds to variant rs487230 [ dbSNP | Ensembl ]. | VAR_047157 | |||||
Experimental info | |||||||||
| Sequence conflict | 840 | 1 | N → S in BAC86814. Ref.2 | ||||||
| Sequence conflict | 990 | 1 | I → L in BAC86814. Ref.2 | ||||||
| Sequence conflict | 1253 | 1 | P → S in BAC86814. Ref.2 | ||||||
| Sequence conflict | 1776 | 1 | E → G in BAC86814. Ref.2 | ||||||
| Sequence conflict | 2576 | 1 | K → R in BAA91084. Ref.2 | ||||||
Sequences
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References
| [1] | "The DNA sequence and biological annotation of human chromosome 1." Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. Bentley D.R.Nature 441:315-321(2006) [PubMed: 16710414] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [2] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 751-2082 AND 2256-2620, VARIANT ALA-2468. |
| [3] | "Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro." Kikuno R., Nagase T., Ishikawa K., Hirosawa M., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O. DNA Res. 6:197-205(1999) [PubMed: 10470851] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2233-2620, VARIANT ALA-2468. Tissue: Brain. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1483-2620. Tissue: Placenta. |
| [5] | "Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry." Brill L.M., Salomon A.R., Ficarro S.B., Mukherji M., Stettler-Gill M., Peters E.C. Anal. Chem. 76:2763-2772(2004) [PubMed: 15144186] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-2024, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [6] | "Large-scale characterization of HeLa cell nuclear phosphoproteins." Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J., Li J., Cohn M.A., Cantley L.C., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004) [PubMed: 15302935] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1943; TYR-2024 AND THR-2559, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [7] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed: 17081983] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1616 AND SER-2047, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [8] | "A probability-based approach for high-throughput protein phosphorylation analysis and site localization." Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P. Nat. Biotechnol. 24:1285-1292(2006) [PubMed: 16964243] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2047, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [9] | "ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage." Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J. Science 316:1160-1166(2007) [PubMed: 17525332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1620, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [10] | "Evaluation of the low-specificity protease elastase for large-scale phosphoproteome analysis." Wang B., Malik R., Nigg E.A., Korner R. Anal. Chem. 80:9526-9533(2008) [PubMed: 19007248] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2047, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "Automated phosphoproteome analysis for cultured cancer cells by two-dimensional nanoLC-MS using a calcined titania/C18 biphasic column." Imami K., Sugiyama N., Kyono Y., Tomita M., Ishihama Y. Anal. Sci. 24:161-166(2008) [PubMed: 18187866] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1141 AND SER-2047, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "Phosphoproteome of resting human platelets." Zahedi R.P., Lewandrowski U., Wiesner J., Wortelkamp S., Moebius J., Schuetz C., Walter U., Gambaryan S., Sickmann A. J. Proteome Res. 7:526-534(2008) [PubMed: 18088087] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2047, MASS SPECTROMETRY. Tissue: Platelet. |
| [13] | "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis." Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III J. Proteome Res. 7:1346-1351(2008) [PubMed: 18220336] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2604, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [14] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2047; SER-2077 AND SER-2604, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [15] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1141; SER-2047; THR-2565 AND SER-2604, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [16] | "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach." Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S. Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2047, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [17] | "Large-scale proteomics analysis of the human kinome." Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H. Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed: 19369195] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2047, MASS SPECTROMETRY. |
| [18] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2047; SER-2561 AND THR-2565, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [19] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed: 21269460] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AC091609 Genomic DNA. No translation available. AK000321 mRNA. Translation: BAA91084.1. Different initiation. AK127075 mRNA. Translation: BAC86814.1. AB028980 mRNA. Translation: BAA83009.1. BC029660 mRNA. Translation: AAH29660.1. Different initiation. |
| IPI | IPI00902614. |
| RefSeq | NP_056121.2. NM_015306.2. |
| UniGene | Hs.477009. |
3D structure databases | |
| ProteinModelPortal | Q9UPU5. |
| SMR | Q9UPU5. Positions 960-1032, 1683-2045. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9UPU5. 2 interactions. |
| STRING | Q9UPU5. |
Protein family/group databases | |
| MEROPS | C19.047. |
PTM databases | |
| PhosphoSite | Q9UPU5. |
Polymorphism databases | |
| DMDM | 212276491. |
Proteomic databases | |
| PRIDE | Q9UPU5. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000294383; ENSP00000294383; ENSG00000162402. |
| GeneID | 23358. |
| KEGG | hsa:23358. |
| UCSC | uc001cyg.2. human. |
Organism-specific databases | |
| CTD | 23358. |
| GeneCards | GC01M055533. |
| HGNC | HGNC:12623. USP24. |
| HPA | HPA026723. HPA028428. |
| MIM | 610569. gene. |
| neXtProt | NX_Q9UPU5. |
| PharmGKB | PA37248. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | prNOG15964. |
| GeneTree | ENSGT00600000084366. |
| HOGENOM | HBG357761. |
| HOVERGEN | HBG105784. |
| InParanoid | Q9UPU5. |
| OMA | HMISFLL. |
| OrthoDB | EOG4T782B. |
| PhylomeDB | Q9UPU5. |
Gene expression databases | |
| ArrayExpress | Q9UPU5. |
| Bgee | Q9UPU5. |
| CleanEx | HS_USP24. |
| Genevestigator | Q9UPU5. |
| GermOnline | ENSG00000162402. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR016024. ARM-type_fold. IPR018200. Pept_C19ubi-hydrolase_C_CS. IPR001394. Peptidase_C19. IPR009060. UBA-like. IPR015940. UBA/transl_elong_EF1B_N_euk. [Graphical view] |
| KO | K11840. |
| Pfam | PF00443. UCH. 1 hit. [Graphical view] |
| SUPFAM | SSF48371. ARM-type_fold. 1 hit. SSF46934. UBA_like. 1 hit. |
| PROSITE | PS50030. UBA. 1 hit. PS00972. UCH_2_1. 1 hit. PS00973. UCH_2_2. 1 hit. PS50235. UCH_2_3. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 45380. |
| SOURCE | Search... |
Entry information
| Entry name | UBP24_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9UPU5 Secondary accession number(s): Q6ZSY2, Q8N2Y4, Q9NXD1 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Peptidase families Classification of peptidase families and list of entries |
| Human chromosome 1 Human chromosome 1: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with